{"id":"W2102596641","doi":"10.1158/1078-0432.ccr-07-1658","title":"Basal-Like Breast Cancer Defined by Five Biomarkers Has Superior Prognostic Value than Triple-Negative Phenotype","year":2008,"lang":"en","type":"article","venue":"Clinical Cancer Research","topic":"Breast Cancer Treatment Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1188,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vancouver Coastal Health Research Institute; University of British Columbia; BC Cancer Agency","funders":"Michael Smith Health Research BC; National Cancer Institute; Sanofi","keywords":"Breast cancer; Triple-negative breast cancer; Oncology; Progesterone receptor; Internal medicine; Medicine; Cytokeratin; Anthracycline; Tissue microarray; Basal (medicine); Biomarker; Estrogen receptor; Cancer; Proportional hazards model; Pathology; Surrogate endpoint; Immunohistochemistry; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008299579,0.0003750064,0.000537647,0.00009248918,0.0006999815,0.00005261937,0.0005288535,0.0003397425,0.000328083],"category_scores_gemma":[0.0009431625,0.0002887752,0.0002832598,0.0005522183,0.002224974,0.00001507105,0.0004580745,0.0005503301,0.00007113998],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002514965,"about_ca_system_score_gemma":0.001558963,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008758447,"about_ca_topic_score_gemma":0.001852313,"domain_scores_codex":[0.9958296,0.0007063914,0.0005883815,0.001181165,0.0007106559,0.0009837694],"domain_scores_gemma":[0.9974704,0.0006377487,0.0001283752,0.0006231191,0.0007447423,0.000395597],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.006416711,0.001168381,0.63628,0.00008557917,0.002009267,0.00006655515,0.0005182787,0.00002053827,0.007977032,0.00001946683,0.3314729,0.01396532],"study_design_scores_gemma":[0.007818987,0.001280431,0.9399307,0.0001925923,0.0001792941,0.00003523274,0.0004444064,0.00008195618,0.009824059,0.0001869746,0.0391794,0.0008459341],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9750759,0.009944689,0.00003262978,0.0107007,0.0009005551,0.001107697,0.00168647,0.00004764022,0.0005037364],"genre_scores_gemma":[0.9847789,0.009349249,0.0002270007,0.0006880739,0.000996194,0.001198288,0.0001643243,0.00008495912,0.002513028],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3036508,"threshold_uncertainty_score":0.9999564,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1088655616907161,"score_gpt":0.4191382268596101,"score_spread":0.310272665168894,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}