{"id":"W2102637097","doi":"10.1099/mic.0.28743-0","title":"Promoter prediction in the rhizobia","year":2006,"lang":"en","type":"article","venue":"Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Ontario Genomics; Ontario Genomics Institute; Genome Canada","keywords":"Promoter; Biology; Genetics; Sinorhizobium meliloti; Gene; Plasmid; Consensus sequence; Computational biology; Gene expression; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002717328,0.0005089462,0.0003037427,0.0005101364,0.000202987,0.0003827983,0.0002140383,0.0002026085,0.001304926],"category_scores_gemma":[0.0006948045,0.0002057104,0.0005154244,0.000334247,0.000103169,0.0002030855,0.0002729592,0.0003462421,0.00137113],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003354611,"about_ca_system_score_gemma":0.0007691804,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001167324,"about_ca_topic_score_gemma":0.00256726,"domain_scores_codex":[0.9998419,0.00002776328,0.00001315957,0.00005426566,0.0000398165,0.00002309171],"domain_scores_gemma":[0.9997512,0.00009531442,0.00004255353,0.00002430058,0.00005821383,0.00002856056],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001148825,0.00009573325,0.02535993,0.0008728544,0.00006207095,0.0006032178,0.0001820765,0.007669215,0.8619582,0.0009747616,0.0009946157,0.1000786],"study_design_scores_gemma":[0.0001795289,0.0008559849,0.04962954,0.0002500208,0.0002042493,0.001945508,0.0003272996,0.08266803,0.8226435,0.003031492,0.03819827,0.00006658278],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8492466,0.005281688,0.128099,0.0002381543,0.00004981618,0.0001741499,0.01021181,0.003087842,0.003610982],"genre_scores_gemma":[0.8582181,0.001927804,0.1154327,0.00008642712,0.00001868934,0.0001361214,0.02199903,0.0002888615,0.001892309],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001304926,"threshold_uncertainty_score":0.004365385,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007548677863388586,"score_gpt":0.1778723614960988,"score_spread":0.1703236836327102,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}