{"id":"W2102739915","doi":"10.1186/1471-2164-9-419","title":"Transcriptomic responses to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in liver: Comparison of rat and mouse","year":2008,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Carcinogens and Genotoxicity Assessment","field":"Biochemistry, Genetics and Molecular Biology","cited_by":99,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Academy of Finland","keywords":"Transcriptome; Biology; Gene; Toxicogenomics; Phenotype; Tetrachlorodibenzo-p-dioxin; DNA microarray; Genetics; Gene expression; Computational biology; Toxicity; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001557772,0.0001502311,0.0002563308,0.0001009348,0.00005419217,0.000009617189,0.0001430218,0.0001192867,0.000007847852],"category_scores_gemma":[0.00003208752,0.0001637463,0.00007578659,0.00008151254,0.00007252088,0.000003043639,0.00008016252,0.00007785604,0.000004236234],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003663885,"about_ca_system_score_gemma":0.0001298576,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001237986,"about_ca_topic_score_gemma":0.001933577,"domain_scores_codex":[0.9989915,0.00006568343,0.0003123466,0.00031932,0.00009504514,0.0002160872],"domain_scores_gemma":[0.9994947,0.00002174733,0.00006103756,0.0002852515,0.00003878172,0.00009844717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005701524,0.0001260266,0.07545449,0.00002912568,0.00001261652,0.000004252991,0.0007897855,0.000442809,0.9216377,0.00001858247,0.0004467508,0.0004677296],"study_design_scores_gemma":[0.0008001458,0.0003827422,0.05994729,0.000006401211,0.00001157451,0.0000273867,0.0004265893,0.0002450717,0.9313184,0.000005265059,0.006613028,0.0002161222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965096,0.001716116,0.001239519,0.00003507837,0.00007501903,0.0002985452,0.00004685419,0.000005847447,0.00007340129],"genre_scores_gemma":[0.9943789,0.0005376033,0.004446471,0.0001073632,0.00005100304,0.00001362069,0.00002678984,0.00002057909,0.0004176409],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0155072,"threshold_uncertainty_score":0.6677381,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03531274979240492,"score_gpt":0.2791539433515144,"score_spread":0.2438411935591095,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}