{"id":"W2102872855","doi":"10.1128/cvi.00254-09","title":"Expression Profiles of Genes in Toll-Like Receptor-Mediated Signaling of Broilers Infected with <i>Clostridium perfringens</i>","year":2009,"lang":"en","type":"article","venue":"Clinical and Vaccine Immunology","topic":"Veterinary medicine and infectious diseases","field":"Veterinary","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"Nutreco (Canada); University of Guelph; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Ministry of Education, India; AgResearch; Poultry Industry Council; Australian Government","keywords":"Clostridium perfringens; TLR2; TRIF; Biology; Toll-like receptor; TLR4; Innate immune system; Microbiology; Downregulation and upregulation; Immune system; TLR5; TLR7; TLR3; Signal transduction; Tumor necrosis factor alpha; Spleen; Receptor; Gene; Cell biology; Immunology; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000261825,0.0002009224,0.0006933747,0.0001706752,0.00003884779,0.000003853209,0.0001299222,0.000185394,0.0001803544],"category_scores_gemma":[0.000277697,0.0001469345,0.00008777341,0.0002495987,0.000151707,0.0001052044,0.00007697786,0.0002759606,0.000005269453],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009167094,"about_ca_system_score_gemma":0.00006570903,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005341227,"about_ca_topic_score_gemma":0.000003623635,"domain_scores_codex":[0.9981503,0.0002700589,0.0009061677,0.0003297341,0.0000943374,0.0002493625],"domain_scores_gemma":[0.9987881,0.0004363187,0.0003095105,0.0002668488,0.0001238807,0.00007530396],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00527779,0.0008055745,0.3012198,0.00008419812,0.00007744149,0.00005876703,0.0001057434,0.000005063915,0.6855791,0.000009603292,0.0003634338,0.006413479],"study_design_scores_gemma":[0.008206736,0.03425916,0.8898932,0.0007729672,0.00008701042,0.000265867,0.0003765975,0.00006298855,0.06389325,0.00006584029,0.001730382,0.0003859487],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970533,0.002092079,0.0000133726,0.000176385,0.0001937799,0.0002537005,0.00001506711,0.00005143834,0.0001508857],"genre_scores_gemma":[0.9980772,0.001440296,0.0001743307,0.0001229314,0.00009592627,0.00001188875,0.00004450164,0.00001461071,0.00001829046],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6216859,"threshold_uncertainty_score":0.5991815,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04033339990176609,"score_gpt":0.3293724359761853,"score_spread":0.2890390360744192,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}