{"id":"W2102946179","doi":"10.1186/1759-8753-3-4","title":"Copy number variation of ribosomal DNA and Pokey transposons in natural populations of Daphnia","year":2012,"lang":"en","type":"article","venue":"Mobile DNA","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; University of Guelph","keywords":"Biology; Transposable element; Retrotransposon; Daphnia pulex; Genetics; Genome; Ribosomal DNA; Ribosomal RNA; 18S ribosomal RNA; 28S ribosomal RNA; Gene; genomic DNA; Evolutionary biology; Phylogenetics; RNA; Daphnia; Zoology; Ribosome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008157729,0.00006363705,0.0000926192,0.00002660873,0.00001688286,0.000001917686,0.00004502287,0.00008406557,0.00002479575],"category_scores_gemma":[0.00001481435,0.00006466802,0.00003461218,0.00007123991,0.00004570356,0.000004579028,0.0000175522,0.00003841259,0.000001413709],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006112828,"about_ca_system_score_gemma":0.00001656295,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000051957,"about_ca_topic_score_gemma":0.0001454671,"domain_scores_codex":[0.9995227,0.00003292081,0.0001724024,0.00009709643,0.00006062262,0.0001142469],"domain_scores_gemma":[0.9997491,0.000005716783,0.00005687811,0.0001187864,0.00003462909,0.00003486773],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003527932,0.000134941,0.30483,0.00002138778,0.00001513405,1.061452e-7,0.0003397255,0.0002201521,0.6927326,0.001166974,0.00007380337,0.0004298808],"study_design_scores_gemma":[0.0006057992,0.00008231202,0.9300819,0.00001115861,0.00002051675,0.000006005385,0.00006668069,0.0007459379,0.06729416,0.0001201024,0.0008492915,0.0001161587],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980321,0.0003642651,0.0008787895,0.00002097389,0.0001206939,0.0001244398,0.00005766366,0.000003072108,0.0003980172],"genre_scores_gemma":[0.9984601,0.00003908163,0.001101955,0.00001891279,0.00004076973,0.000010731,0.0001876617,0.000006921639,0.0001338831],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6254385,"threshold_uncertainty_score":0.2637085,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006925016378998596,"score_gpt":0.2596781746887155,"score_spread":0.2527531583097169,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}