{"id":"W2102999930","doi":"10.1007/s00792-004-0425-0","title":"The genome of BCJA1c: a bacteriophage active against the alkaliphilic bacterium, Bacillus clarkii","year":2004,"lang":"en","type":"article","venue":"Extremophiles","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Temperateness; Bacteriophage; Lysogenic cycle; Prophage; Genome; Integrase; Genetics; Gene; Lysin; Whole genome sequencing; Microbiology; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002018694,0.0004869259,0.0003923755,0.0005644269,0.0004971428,0.0006123033,0.0003198485,0.0006039497,0.0007096133],"category_scores_gemma":[0.0005191183,0.0001972999,0.000256799,0.0006770552,0.0003542503,0.0002500828,0.0002757572,0.001058911,0.0003921107],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009785355,"about_ca_system_score_gemma":0.001093679,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01275762,"about_ca_topic_score_gemma":0.008662999,"domain_scores_codex":[0.9998404,0.00001373806,0.000006649059,0.00004202146,0.00006524899,0.00003198745],"domain_scores_gemma":[0.9996728,0.00007248171,0.00006236514,0.00002163063,0.00007319496,0.00009759211],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000500268,0.00004358237,0.0008761931,0.0001842799,0.00001378745,0.0000591346,0.0001168172,0.0001560215,0.9934788,0.0001953647,0.0003122971,0.004063475],"study_design_scores_gemma":[0.000184139,0.0005442986,0.1207525,0.0001520082,0.0002889373,0.001267449,0.0006707986,0.003563426,0.8342499,0.0006636098,0.03756534,0.00009770013],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9806662,0.002451805,0.003823116,0.0003946952,0.0001163543,0.00008968065,0.009710002,0.0002358165,0.002512452],"genre_scores_gemma":[0.9456701,0.001579666,0.008125093,0.0002802456,0.0000505139,0.00007028278,0.03820807,0.0002344934,0.005781655],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01275762,"threshold_uncertainty_score":0.02536672,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007921156489856062,"score_gpt":0.2083570181676446,"score_spread":0.2004358616777886,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}