{"id":"W2103006829","doi":"10.1093/bioinformatics/btq122","title":"LOTUS, a new domain associated with small RNA pathways in the germline","year":2010,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":79,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Multidisciplinary University Research Initiative; Institute of Cancer Research; Université Pierre et Marie Curie; Institut National Du Cancer; Centre National de la Recherche Scientifique","keywords":"Piwi-interacting RNA; Biology; Germline; Argonaute; Genetics; Germ plasm; Lotus japonicus; Lotus; RasiRNA; RNA interference; RNA-binding protein; Germ cell; RNA; Computational biology; Cell biology; Gene; Embryo; Mutant; Botany","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005032168,0.0002301562,0.0001697994,0.0003702983,0.000317537,0.0003608598,0.0001703173,0.0002722275,0.00101142],"category_scores_gemma":[0.00009420911,0.000114791,0.0002494417,0.0002474345,0.0002171395,0.00050584,0.0004180617,0.0002686803,0.0005642376],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002290963,"about_ca_system_score_gemma":0.0001875249,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002856209,"about_ca_topic_score_gemma":0.0005179563,"domain_scores_codex":[0.9999545,0.000003076268,0.000002747464,0.00001660484,0.0000133851,0.000009733818],"domain_scores_gemma":[0.999928,0.00001002773,0.00002100455,0.000008921367,0.000007719495,0.00002428902],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001872561,0.00001823642,0.003729475,0.0001294235,0.0000140551,0.000678595,0.0000664034,0.0001741859,0.9784203,0.001478377,0.0003371197,0.01476647],"study_design_scores_gemma":[0.00004856233,0.0004281405,0.06779205,0.00005277095,0.0001046664,0.01665419,0.0002004839,0.006014807,0.7706086,0.003034722,0.1349898,0.00007114041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9561071,0.008293518,0.02823254,0.0001786076,0.000108179,0.00006039633,0.0009742547,0.0008200943,0.005225409],"genre_scores_gemma":[0.9658847,0.001607005,0.02084792,0.000193919,0.00004905996,0.00005485994,0.002487943,0.00007876541,0.008795897],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00101142,"threshold_uncertainty_score":0.003383577,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02410917086021114,"score_gpt":0.1943281544527209,"score_spread":0.1702189835925097,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}