{"id":"W2104130372","doi":"10.1074/mcp.m110.004796","title":"A Novel Proteomics Approach to Identify SUMOylated Proteins and Their Modification Sites in Human Cells","year":2010,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Institutes of Health Research","keywords":"Proteomics; Posttranslational modification; Computational biology; Chemistry; Cell biology; Biology; Biochemistry; Gene; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002955646,0.0003989371,0.0004595785,0.0007224184,0.000381164,0.0004736955,0.0004195543,0.0004709415,0.001477308],"category_scores_gemma":[0.0001958283,0.0002298898,0.0003332247,0.0004848691,0.0001899424,0.0002961397,0.0003949337,0.0005343136,0.001072698],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000261444,"about_ca_system_score_gemma":0.0002893815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004232819,"about_ca_topic_score_gemma":0.0008507367,"domain_scores_codex":[0.9997913,0.00003153913,0.00001772826,0.00007515053,0.00005954582,0.00002465888],"domain_scores_gemma":[0.9999155,0.00001613318,0.00001019172,0.00001801449,0.00002499247,0.00001509713],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007502578,0.00001957919,0.0002543219,0.00003857561,0.000009470135,0.0001125783,0.00002264918,0.00003923832,0.9933922,0.0001877317,0.0001547507,0.005693777],"study_design_scores_gemma":[0.00004246383,0.0002641584,0.005191014,0.00001227274,0.00005845814,0.002534639,0.00005376461,0.002861783,0.9652524,0.0004232638,0.02328645,0.00001937964],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5082396,0.0122988,0.4629096,0.001125719,0.0003610735,0.0009023618,0.003318371,0.001669543,0.009174828],"genre_scores_gemma":[0.6076507,0.008944091,0.365067,0.0007271561,0.0001433206,0.0006409233,0.00388363,0.0001678628,0.01277531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001477308,"threshold_uncertainty_score":0.00494206,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01834295570086381,"score_gpt":0.2531191773789006,"score_spread":0.2347762216780368,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}