{"id":"W2104266062","doi":"10.1002/prot.21198","title":"NMR structure of YcgL, a conserved protein from <i>Escherichia coli</i> representing the DUF709 family, with a novel α/β/α sandwich fold","year":2007,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Concordia University; Biotechnology Research Institute","funders":"","keywords":"Fold (higher-order function); Escherichia coli; Genetics; Chemistry; Biology; Computational biology; Computer science; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001535028,0.0002585714,0.0002392304,0.00004042704,0.0002281734,0.0000526821,0.0001613543,0.0001900909,0.00001003942],"category_scores_gemma":[0.00005407699,0.0001593452,0.00006108043,0.0001664933,0.0001948714,0.000005303657,0.0001500655,0.000180429,2.810452e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008045174,"about_ca_system_score_gemma":0.00007114026,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001458363,"about_ca_topic_score_gemma":0.0004264064,"domain_scores_codex":[0.9988183,0.00002244849,0.0004317884,0.0002401224,0.0002141635,0.0002732214],"domain_scores_gemma":[0.9990034,0.00002310252,0.000342853,0.0003821328,0.0001747785,0.0000737213],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004291032,0.00001775696,0.004133292,0.00008122723,0.0001993004,3.198667e-7,0.0002977521,0.00003846687,0.9928812,0.0001291275,0.00008816802,0.001704223],"study_design_scores_gemma":[0.003171792,0.001048519,0.09526809,0.00009620847,0.0001961283,0.00002297916,0.002647895,0.0008046203,0.879604,0.0008438298,0.0156857,0.0006102583],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9789908,0.0005918094,0.01844523,0.0001073537,0.0001005695,0.001175347,0.0002968111,0.00000878314,0.0002832857],"genre_scores_gemma":[0.9762496,0.00002767498,0.02296727,0.0004146392,0.0001656147,0.00001693047,0.00008494793,0.00001924196,0.00005406144],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1132773,"threshold_uncertainty_score":0.6497907,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008376279982007486,"score_gpt":0.198440859005508,"score_spread":0.1900645790235005,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}