{"id":"W2104269722","doi":"10.1094/mpmi-09-11-0238","title":"A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors in <i>Melampsora larici-populina</i> (Poplar Leaf Rust)","year":2011,"lang":"en","type":"article","venue":"Molecular Plant-Microbe Interactions","topic":"Bioenergy crop production and management","field":"Agricultural and Biological Sciences","cited_by":141,"is_retracted":false,"has_abstract":true,"ca_institutions":"Natural Resources Canada","funders":"Natural Resources Canada; Office of Science; Institut National de la Recherche Agronomique; Universiteit Gent; Joint Genome Institute; U.S. Department of Energy","keywords":"Effector; Biology; Gene; Rust (programming language); Obligate; Genetics; Fungus; Candidate gene; Genome; Host (biology); Computational biology; Botany; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000939512,0.0002798111,0.0001708751,0.0003578061,0.0001350301,0.0002158627,0.00006921359,0.0001361911,0.0003163479],"category_scores_gemma":[0.0001104293,0.00006473638,0.0002590636,0.0002671818,0.0001078427,0.0001050202,0.0001457066,0.0001533616,0.0001841753],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009731277,"about_ca_system_score_gemma":0.0001453789,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003690142,"about_ca_topic_score_gemma":0.0005388958,"domain_scores_codex":[0.9999418,0.000005658484,0.000005087817,0.00001912853,0.00001399419,0.00001430373],"domain_scores_gemma":[0.9998993,0.00002482599,0.00002824091,0.000006530167,0.00001479111,0.00002632953],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006763756,0.000008897444,0.001907995,0.00003366158,0.000005575753,0.0001119236,0.00002145543,0.00004466215,0.9957794,0.0000161058,0.00001130435,0.001991325],"study_design_scores_gemma":[0.00002014426,0.0007809992,0.4182192,0.00002937478,0.0001386977,0.002840975,0.000230531,0.001174219,0.5709944,0.0001525716,0.005401747,0.00001708377],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957683,0.001038264,0.001560503,0.00002124063,0.000003417361,0.0000159037,0.001201442,0.00003356651,0.0003574273],"genre_scores_gemma":[0.9872925,0.001097431,0.003757237,0.00005060121,0.000007487326,0.0000285014,0.006482217,0.00001529254,0.001268778],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0003690142,"threshold_uncertainty_score":0.00105828,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02858590957059949,"score_gpt":0.2209567170348646,"score_spread":0.1923708074642651,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}