{"id":"W2104502840","doi":"10.1093/bioinformatics/btu808","title":"Kablammo: an interactive, web-based BLAST results visualizer","year":2014,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":92,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; Alberta Innovates - Health Solutions","keywords":"Computer science; MIT License; Visualization; License; Source code; Web application; Code (set theory); Interactive visualization; Sequence (biology); Software; World Wide Web; Programming language; Data mining; Biology; Operating system; Set (abstract data type); Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000236036,0.0001695589,0.0001440411,0.00004556106,0.00009572107,0.00004545253,0.0002004521,0.0001027432,0.000007194283],"category_scores_gemma":[0.0001308857,0.0001495659,0.00007043912,0.00005705174,0.0000700797,0.000002648665,0.00009603676,0.00005931688,0.00004659344],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009684645,"about_ca_system_score_gemma":0.00005651985,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000068322,"about_ca_topic_score_gemma":0.00003568068,"domain_scores_codex":[0.9991089,0.00003909652,0.0003344291,0.0001724342,0.0001123588,0.0002327451],"domain_scores_gemma":[0.9992079,0.00002410471,0.0001429823,0.0004265998,0.0001004003,0.00009808461],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002000855,0.0007762429,0.006707342,0.0003121265,0.0004939291,0.000003180058,0.002405787,0.004181461,0.8386565,0.001409324,0.07186785,0.07118545],"study_design_scores_gemma":[0.003240771,0.001499675,0.005816473,0.00002731964,0.00003677432,0.000008158995,0.0003924303,0.07408588,0.1012567,0.00008413303,0.8129691,0.000582575],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9711183,0.0000665893,0.005637255,0.0001633746,0.0003510736,0.0002022643,0.0001092671,0.00002082725,0.022331],"genre_scores_gemma":[0.9900967,0.00003575657,0.008423384,0.0007258764,0.0002060737,0.00001127417,0.0001714661,0.00001881576,0.0003105979],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7411013,"threshold_uncertainty_score":0.6099122,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01073669606109645,"score_gpt":0.2563567379274806,"score_spread":0.2456200418663841,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}