{"id":"W2104547142","doi":"10.1099/ijs.0.02346-0","title":"Phylogenetic relationships between Bacillus species and related genera inferred from comparison of 3′ end 16S rDNA and 5′ end 16S–23S ITS nucleotide sequences","year":2003,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Identification and Quantification in Food","field":"Biochemistry, Genetics and Molecular Biology","cited_by":203,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Bacillus circulans; Bacillus sphaericus; Paenibacillus; Bacillus (shape); Bacillaceae; 16S ribosomal RNA; Bacillus anthracis; Bacillales; Phylogenetic tree; GenBank; Bacillus amyloliquefaciens; Microbiology; Bacillus cereus; Bacillus subtilis; Genetics; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003544179,0.0003003299,0.0004088565,0.001352514,0.0004968437,0.0005224212,0.0001561298,0.0002640309,0.0008283929],"category_scores_gemma":[0.0007739518,0.0002100601,0.0003062965,0.0009432866,0.0003042827,0.0002483939,0.0003710296,0.0003830007,0.0003877438],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002029136,"about_ca_system_score_gemma":0.0003210733,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007921899,"about_ca_topic_score_gemma":0.000885629,"domain_scores_codex":[0.999665,0.00007081631,0.00004323666,0.00007296857,0.00008294613,0.00006505787],"domain_scores_gemma":[0.9995309,0.0001189567,0.0001336022,0.0000245486,0.00009910989,0.0000929317],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001654003,0.0002093949,0.2902298,0.0006147652,0.0001904841,0.0006842081,0.001632961,0.001227444,0.6309233,0.0008702751,0.0002782102,0.07148513],"study_design_scores_gemma":[0.00004484283,0.001078088,0.9551012,0.0002652429,0.0001684427,0.002003196,0.001682941,0.004369345,0.02421515,0.001583101,0.009437977,0.00005046274],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995384,0.001233443,0.00171245,0.00003267794,0.00001554711,0.00003750552,0.0003263339,0.00003094051,0.001227073],"genre_scores_gemma":[0.9862985,0.0009634512,0.009870643,0.00004011414,0.00001047488,0.00004118135,0.002170494,0.00001103653,0.0005940104],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001352514,"threshold_uncertainty_score":0.002771199,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04847307062835758,"score_gpt":0.2791609066101816,"score_spread":0.230687835981824,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}