{"id":"W2104547142","doi":"10.1099/ijs.0.02346-0","title":"Phylogenetic relationships between Bacillus species and related genera inferred from comparison of 3′ end 16S rDNA and 5′ end 16S–23S ITS nucleotide sequences","year":2003,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Identification and Quantification in Food","field":"Biochemistry, Genetics and Molecular Biology","cited_by":203,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Bacillus circulans; Bacillus sphaericus; Paenibacillus; Bacillus (shape); Bacillaceae; 16S ribosomal RNA; Bacillus anthracis; Bacillales; Phylogenetic tree; GenBank; Bacillus amyloliquefaciens; Microbiology; Bacillus cereus; Bacillus subtilis; Genetics; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005543732,0.0001474734,0.0003874107,0.0001642736,0.0001109718,0.00003348882,0.0001876444,0.0001851255,0.00008309513],"category_scores_gemma":[0.0004337956,0.0001294719,0.00006665943,0.00006404213,0.0003234714,0.00002254645,0.00005617006,0.0001439315,0.000006394357],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002874592,"about_ca_system_score_gemma":0.00007831319,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007397035,"about_ca_topic_score_gemma":0.000009382616,"domain_scores_codex":[0.9980294,0.0004369814,0.001058179,0.000228032,0.0001344549,0.0001129977],"domain_scores_gemma":[0.9982728,0.0001865987,0.0008615825,0.0001368313,0.0004682183,0.0000740023],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004732799,0.00007711364,0.1097008,0.0004465236,0.000721839,0.00000319652,0.0006578943,0.00008539412,0.8836797,0.003866045,0.0006313818,0.0000827773],"study_design_scores_gemma":[0.005035173,0.001030628,0.7151638,0.003471736,0.0009146975,0.004163116,0.007997041,0.0006412463,0.2440081,0.004751259,0.01166507,0.001158188],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9834732,0.01439113,0.0007215173,0.0003306415,0.0004479342,0.0001859276,0.000172671,0.000003762498,0.0002731433],"genre_scores_gemma":[0.9974663,0.0008792239,0.001006761,0.00002153243,0.00009567613,0.000004842456,0.0001908152,0.000009292615,0.0003255511],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6396717,"threshold_uncertainty_score":0.527971,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04847307062835758,"score_gpt":0.2791609066101816,"score_spread":0.230687835981824,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}