{"id":"W2104614692","doi":"10.1111/nph.12819","title":"Conservation and divergence of gene expression plasticity following <i>c</i>. 140 million years of evolution in lodgepole pine (<i><scp>P</scp>inus contorta</i>) and interior spruce (<i><scp>P</scp>icea glauca</i> × <i><scp>P</scp>icea engelmannii</i>)","year":2014,"lang":"en","type":"article","venue":"New Phytologist","topic":"Forest ecology and management","field":"Environmental Science","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Genome British Columbia; Forest Genetics Council of British Columbia; Genome Canada","keywords":"Biology; Pinus contorta; Transcriptome; Gene; Evolutionary biology; Natural selection; Gene expression; Phenotypic plasticity; Population; Adaptation (eye); RNA-Seq; Genetics; Ecology; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000798501,0.00045715,0.0007731021,0.0002016401,0.0001980256,0.00003893225,0.0004809622,0.0003764126,0.00001616799],"category_scores_gemma":[0.002330818,0.0004768535,0.000140585,0.0005085254,0.0008981981,0.0005958496,0.0006747489,0.0003608131,0.00003045928],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001894193,"about_ca_system_score_gemma":0.00004755586,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002241226,"about_ca_topic_score_gemma":0.002787315,"domain_scores_codex":[0.9966053,0.0002893475,0.0009141495,0.0009494517,0.000525891,0.0007158896],"domain_scores_gemma":[0.9970087,0.001472868,0.0007298663,0.0004767566,0.00004522519,0.0002665567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005397599,0.0003251079,0.6469769,0.0002306624,0.00008176124,0.00004509657,0.002166673,0.0009923803,0.3313402,0.0007691917,0.01594592,0.001072179],"study_design_scores_gemma":[0.002577328,0.0006617768,0.9126485,0.0002352318,0.0001334299,0.00001877446,0.001028017,0.001796767,0.06892274,0.001290952,0.01054559,0.0001409002],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9841657,0.001147187,0.01124689,0.00007783279,0.0006674124,0.0007054439,0.00004002247,0.0000770774,0.001872459],"genre_scores_gemma":[0.9948624,0.0003847818,0.003570816,0.0003440636,0.00008570649,0.00004820469,0.00002765774,0.00003575794,0.0006406311],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2656716,"threshold_uncertainty_score":0.9997683,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008506782024755508,"score_gpt":0.2137482135372389,"score_spread":0.2052414315124834,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}