{"id":"W2104649471","doi":"10.1128/mbio.00142-11","title":"Lipopolysaccharide (LPS) Inner-Core Phosphates Are Required for Complete LPS Synthesis and Transport to the Outer Membrane in Pseudomonas aeruginosa PAO1","year":2011,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Bacterial outer membrane; Lipopolysaccharide; Lipid A; Inner membrane; Pseudomonas aeruginosa; Biochemistry; Phospholipid; Kinase; Membrane; Phosphorylation; Chemistry; Bacteria; Hexose; Biology; Microbiology; Escherichia coli; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001973867,0.0002035703,0.0002449976,0.00005440178,0.00007850601,0.0000146154,0.0003153779,0.0002813722,0.00002606212],"category_scores_gemma":[0.0000556599,0.000153286,0.00007892633,0.00007981221,0.0001323723,0.000003384036,0.00009858918,0.00007940539,0.000005778401],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007809662,"about_ca_system_score_gemma":0.00002243539,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000201905,"about_ca_topic_score_gemma":0.001088913,"domain_scores_codex":[0.9988663,0.00002292522,0.0002630725,0.0004419114,0.00006603592,0.0003397699],"domain_scores_gemma":[0.9993654,0.00001844166,0.00008029403,0.0004113785,0.00004909341,0.00007539591],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003273122,0.00006004209,0.005176218,0.00002942936,0.00004703266,0.000008029383,0.0002063651,0.000001434681,0.9879311,0.0002211951,0.0002860939,0.005705757],"study_design_scores_gemma":[0.000425088,0.0002390535,0.00910983,0.00002824625,0.00003494491,0.00001391772,0.0001480534,0.00001693669,0.965239,0.0001407486,0.02435789,0.0002462645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967384,0.0003726625,0.0003276121,0.001566098,0.0002093421,0.0004917912,0.0001951001,0.00001799938,0.00008103314],"genre_scores_gemma":[0.9969625,0.0002545367,0.001609878,0.0006822713,0.0001385588,0.0001497635,0.00004543992,0.00002717752,0.0001298011],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0240718,"threshold_uncertainty_score":0.625082,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0325126130439148,"score_gpt":0.2298268929748888,"score_spread":0.197314279930974,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}