{"id":"W2104863787","doi":"10.1371/journal.pgen.1000046","title":"Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus","year":2008,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":531,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer; McGill University","funders":"National Institute of Allergy and Infectious Diseases; Fundação de Amparo à Pesquisa do Estado de São Paulo; Merck","keywords":"Biology; Aspergillus fumigatus; Gene; Genetics; Pseudogene; Gene duplication; Genome; Horizontal gene transfer; Comparative genomics; Transposable element; Gene cluster; Gene family; Genomics; Microbiology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00002666335,0.0001697845,0.0001082918,0.0003536083,0.0001422553,0.0001480368,0.00009945489,0.0002094511,0.0006378328],"category_scores_gemma":[0.0001984826,0.00006988989,0.0001957906,0.0002957898,0.0000889279,0.00009753415,0.0001696943,0.0001790614,0.0002737621],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001177084,"about_ca_system_score_gemma":0.00008718483,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002267288,"about_ca_topic_score_gemma":0.002121443,"domain_scores_codex":[0.9999534,0.000004321522,0.000004402565,0.00001539621,0.00001372131,0.000008771155],"domain_scores_gemma":[0.9998661,0.00002973602,0.00005404799,0.00001025675,0.00001469317,0.00002522628],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003007813,0.00002906172,0.02089232,0.0001415401,0.00002030383,0.0004804468,0.0001035448,0.0001881949,0.9643117,0.00008596761,0.0001168721,0.01332923],"study_design_scores_gemma":[0.00003788997,0.0006444044,0.7881601,0.00007742493,0.0001753952,0.008118604,0.0003905414,0.001574433,0.187517,0.0005397974,0.01273784,0.00002667275],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995184,0.002020318,0.001429966,0.00005573002,0.00001154281,0.00001271916,0.0007993968,0.00004091548,0.0004453998],"genre_scores_gemma":[0.9948397,0.0005715299,0.002000393,0.00004412852,0.000009178339,0.00001124924,0.002027707,0.000007288761,0.0004888956],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002267288,"threshold_uncertainty_score":0.004508197,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03620159217745175,"score_gpt":0.2555427688381997,"score_spread":0.2193411766607479,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}