{"id":"W2104863787","doi":"10.1371/journal.pgen.1000046","title":"Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus","year":2008,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":531,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer; McGill University","funders":"National Institute of Allergy and Infectious Diseases; Fundação de Amparo à Pesquisa do Estado de São Paulo; Merck","keywords":"Biology; Aspergillus fumigatus; Gene; Genetics; Pseudogene; Gene duplication; Genome; Horizontal gene transfer; Comparative genomics; Transposable element; Gene cluster; Gene family; Genomics; Microbiology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001658033,0.0001557789,0.0002523367,0.00005494463,0.0001047952,0.00001079284,0.0001772915,0.000103169,0.0001599737],"category_scores_gemma":[0.00007766537,0.0001080948,0.0001091521,0.0001930861,0.0001324429,0.00001688793,0.00003969298,0.0002560509,0.000125386],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009655042,"about_ca_system_score_gemma":0.0001663517,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005004974,"about_ca_topic_score_gemma":0.00008893675,"domain_scores_codex":[0.9986497,0.00007384938,0.0002845736,0.0002805774,0.0003663268,0.00034504],"domain_scores_gemma":[0.9991511,0.00007847488,0.0000454674,0.0005831384,0.00005536282,0.00008643525],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000188847,0.0004763502,0.8570702,0.0000666338,0.00005121838,0.0005681838,0.00378205,0.00001398587,0.135364,0.0000189871,0.001572574,0.0008268998],"study_design_scores_gemma":[0.001072946,0.0003741638,0.98699,0.00003270071,0.00009066649,0.0001572521,0.0005643816,0.0007608762,0.006517316,0.0001035259,0.003159579,0.0001765505],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891344,0.004239652,0.00001187208,0.0002262283,0.00007033987,0.0003845598,0.00001673878,0.00002725041,0.005888978],"genre_scores_gemma":[0.9962121,0.001400243,0.0002032651,0.001065,0.000190429,0.00001757901,0.00002343379,0.00002148683,0.0008664728],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1299198,"threshold_uncertainty_score":0.4407977,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03620159217745175,"score_gpt":0.2555427688381997,"score_spread":0.2193411766607479,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}