{"id":"W2104934636","doi":"10.1128/jcm.00659-10","title":"Improved Identification of Epidemiologically Related Strains of <i>Salmonella enterica</i> by use of a Fusion Algorithm Based on Pulsed-Field Gel Electrophoresis and Multiple-Locus Variable-Number Tandem-Repeat Analysis","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Multiple Loci VNTR Analysis; Pulsed-field gel electrophoresis; Variable number tandem repeat; Biology; Genetics; DNA profiling; Salmonella enterica; Computational biology; Salmonella; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002302564,0.0008442111,0.001003051,0.001955861,0.0003880308,0.001200111,0.0006311938,0.0008617247,0.0004857416],"category_scores_gemma":[0.005791566,0.0002883839,0.001077202,0.001244785,0.0003755628,0.001042103,0.0008481604,0.0007684643,0.0004096254],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004575848,"about_ca_system_score_gemma":0.0007137872,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002558955,"about_ca_topic_score_gemma":0.00144141,"domain_scores_codex":[0.9988686,0.0003007982,0.0001237984,0.0003499595,0.0002703114,0.00008643604],"domain_scores_gemma":[0.9970608,0.001181996,0.0005228575,0.0002243044,0.0009012878,0.0001087078],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009075368,0.0006760372,0.08579978,0.0002549324,0.0003168847,0.0001907653,0.0006165867,0.07277075,0.2302394,0.002051322,0.001318011,0.6048579],"study_design_scores_gemma":[0.0000465586,0.0003451855,0.03446798,0.00002281412,0.0001015327,0.0006832405,0.0001841888,0.896327,0.0647913,0.001413926,0.00152429,0.00009197887],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3909447,0.0001847796,0.6060786,0.0001230199,0.00002652882,0.00009552046,0.0001786628,0.001724332,0.0006439172],"genre_scores_gemma":[0.3780353,0.00005405291,0.6207762,0.00004443973,0.000009500147,0.00005319125,0.0006112163,0.00007613498,0.0003399288],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.002558955,"threshold_uncertainty_score":0.01217723,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02198856650105616,"score_gpt":0.2898457658965808,"score_spread":0.2678571993955247,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}