{"id":"W2104955514","doi":"10.1101/gr.2171704","title":"Dynamic Building of a BAC Clone Tiling Path for the Rat Genome Sequencing Project","year":2004,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Heart, Lung, and Blood Institute; National Human Genome Research Institute; BC Cancer Agency; National Institutes of Health","keywords":"Biology; clone (Java method); Genome; Genetics; Whole genome sequencing; Sequence assembly; Computational biology; Shotgun sequencing; Genome project; Reference genome; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001724086,0.0005156246,0.0006071858,0.001592534,0.0008854007,0.0009594991,0.0009778114,0.0006047437,0.004729574],"category_scores_gemma":[0.00485193,0.0009426762,0.0006029345,0.001535274,0.0004264741,0.001170219,0.001261932,0.001830213,0.002645866],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008041396,"about_ca_system_score_gemma":0.001571234,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002205193,"about_ca_topic_score_gemma":0.005023273,"domain_scores_codex":[0.9992576,0.00009516112,0.00006326916,0.0002960976,0.0001993566,0.00008839162],"domain_scores_gemma":[0.9987932,0.0003914397,0.0001215048,0.0002389317,0.0003197818,0.0001350442],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001463835,0.0003030855,0.007745965,0.0005547717,0.00009437908,0.0009840948,0.001263084,0.02230442,0.5991902,0.01326531,0.01526098,0.33757],"study_design_scores_gemma":[0.0003246697,0.0008690811,0.009723617,0.0001489003,0.0001452576,0.0007873302,0.0004766068,0.2673623,0.607047,0.01517555,0.0976692,0.0002704598],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1056718,0.0002298298,0.8583038,0.0002031644,0.0001649079,0.0009878293,0.004530013,0.02680638,0.003102241],"genre_scores_gemma":[0.06108118,0.00009563275,0.9296915,0.00007762944,0.00001073813,0.0008025044,0.005007569,0.001629789,0.00160354],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.004729574,"threshold_uncertainty_score":0.01582199,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0675065559957386,"score_gpt":0.3651671570282568,"score_spread":0.2976606010325181,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}