{"id":"W2104955514","doi":"10.1101/gr.2171704","title":"Dynamic Building of a BAC Clone Tiling Path for the Rat Genome Sequencing Project","year":2004,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Heart, Lung, and Blood Institute; National Human Genome Research Institute; BC Cancer Agency; National Institutes of Health","keywords":"Biology; clone (Java method); Genome; Genetics; Whole genome sequencing; Sequence assembly; Computational biology; Shotgun sequencing; Genome project; Reference genome; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001353838,0.000140834,0.0001811558,0.00009920462,0.0003662152,0.0000311868,0.0004129705,0.00009308484,0.000003165906],"category_scores_gemma":[0.0001483347,0.0001075197,0.0001245923,0.0002292131,0.000199557,7.888203e-7,0.0003379399,0.0001558382,0.00000234556],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001079378,"about_ca_system_score_gemma":0.0004525353,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001417782,"about_ca_topic_score_gemma":0.00005269639,"domain_scores_codex":[0.9985074,0.00006685889,0.0002500112,0.0003860591,0.0002407946,0.0005488793],"domain_scores_gemma":[0.9990363,0.00008690072,0.00006453905,0.0004549735,0.0003073149,0.00004999551],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000068922,0.00002036884,0.00005179352,0.00007256799,0.00009865473,0.000001603919,0.0003955961,0.002676347,0.9955978,0.0001867709,0.000007950236,0.0008215646],"study_design_scores_gemma":[0.00565036,0.004459062,0.0104906,0.0001550448,0.0001689398,0.0001060338,0.008579773,0.002168872,0.8230352,0.007551698,0.1362073,0.001427175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9818966,0.01174213,0.004793967,0.0002063696,0.00008277123,0.0009713706,0.00009359336,0.000002624357,0.000210514],"genre_scores_gemma":[0.9891675,0.002345663,0.007866634,0.00002739328,0.0001695418,0.0001582382,0.00003131985,0.00003345351,0.0002002307],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1725627,"threshold_uncertainty_score":0.4384526,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0675065559957386,"score_gpt":0.3651671570282568,"score_spread":0.2976606010325181,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}