{"id":"W2105074464","doi":"10.1186/1471-2105-15-s7-s8","title":"Population substructure in Cache County, Utah: the Cache County study","year":2014,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Forensic and Genetic Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Neurological Disorders and Stroke; National Human Genome Research Institute; National Institute on Aging; University of California, San Diego; Genentech; National Institutes of Health; National Institute of Biomedical Imaging and Bioengineering; Canadian Institutes of Health Research; University of California, Los Angeles; Servier; Eisai; Northern California Institute for Research and Education; Pfizer; Biogen; BioClinica; Alzheimer's Association; Amorfix Life Sciences; F. Hoffmann-La Roche; Medpace; Bristol-Myers Squibb; Eli Lilly and Company; AstraZeneca; Novartis Pharmaceuticals Corporation; Synarc; Dana Foundation; Bayer HealthCare; Alzheimer's Disease Neuroimaging Initiative; Meso Scale Diagnostics; Foundation for the National Institutes of Health","keywords":"International HapMap Project; Population; Cache; Population stratification; Geography; Demography; Computer science; Biology; Genetics; Genotype; Genotyping; Sociology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008066988,0.0001468264,0.0002565352,0.001099038,0.002049026,0.0007207501,0.000630811,0.000482858,0.0008540945],"category_scores_gemma":[0.003208088,0.0001128926,0.0001618571,0.002436501,0.000439344,0.0002681584,0.0007050518,0.000372823,0.00009047474],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001482548,"about_ca_system_score_gemma":0.002159795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.346067,"about_ca_topic_score_gemma":0.5982527,"domain_scores_codex":[0.9993575,0.0001711646,0.00004142345,0.0002067021,0.0001574022,0.00006579088],"domain_scores_gemma":[0.9986042,0.0001892648,0.0003876139,0.0001619711,0.0004883399,0.000168647],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000807839,0.00002986802,0.9941813,0.00001250722,0.00007081382,0.00009099241,0.0006643651,0.0001077094,0.0001897508,0.0001404276,0.002094554,0.002336856],"study_design_scores_gemma":[0.000008364561,0.00002462966,0.9977583,0.00001646055,0.00004090821,0.0001006133,0.0005218789,0.0002390105,0.00004945095,0.00009460071,0.001141223,0.000004478435],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970483,0.0002396466,0.0001873225,0.0001559391,0.000007450682,0.00002691867,0.001561414,0.000007623262,0.0007653616],"genre_scores_gemma":[0.997726,0.00010605,0.0003403184,0.0001090589,0.000008480256,0.00005595379,0.001338084,0.000005117349,0.0003108563],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.346067,"threshold_uncertainty_score":0.6881054,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01517379972665087,"score_gpt":0.2727620459501549,"score_spread":0.257588246223504,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}