{"id":"W2105106957","doi":"10.1534/g3.112.004044","title":"Comparative Genomics of a Plant-Pathogenic Fungus,<i>Pyrenophora tritici-repentis</i>, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence","year":2013,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":179,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Human Genome Research Institute; Joint Genome Institute; U.S. Department of Energy; Oregon State University; Office of Science; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Genome; Pyrenophora; Genetics; Transposable element; Gene; Comparative genomics; Population; Horizontal gene transfer; Genomics; Fungus; Effector; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008179459,0.0002399059,0.0002478075,0.000433771,0.0001555626,0.0002610482,0.0001377928,0.0002445133,0.000414024],"category_scores_gemma":[0.0001759414,0.0001128022,0.0003319697,0.0005020382,0.000125235,0.00015784,0.0002095068,0.0003486478,0.0001722352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002312137,"about_ca_system_score_gemma":0.0001151205,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001510627,"about_ca_topic_score_gemma":0.001938047,"domain_scores_codex":[0.999909,0.000008943942,0.000005636529,0.00003873041,0.00002012817,0.0000175586],"domain_scores_gemma":[0.9998651,0.00003966241,0.0000402898,0.000009951668,0.00001686887,0.00002808112],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009551571,0.00001628549,0.002450506,0.00003579531,0.00001364558,0.0001088782,0.00006902122,0.000117184,0.994985,0.00004515889,0.00001603508,0.002047007],"study_design_scores_gemma":[0.00002321088,0.0007282696,0.7997357,0.00002610578,0.0001337084,0.003135641,0.0003740987,0.003035393,0.187634,0.0002030606,0.004941689,0.00002920014],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974015,0.000295287,0.001023881,0.00001941478,0.00000227287,0.000007668939,0.0007614774,0.00002765439,0.0004608224],"genre_scores_gemma":[0.9913134,0.000376486,0.002504918,0.00004161286,0.000004730265,0.00001456638,0.00509946,0.00003233841,0.0006124504],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001510627,"threshold_uncertainty_score":0.003003657,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02295034862223531,"score_gpt":0.2485967887790124,"score_spread":0.225646440156777,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}