{"id":"W2105245948","doi":"10.1126/science.1240578","title":"Distinguishable Epidemics of Multidrug-Resistant <i>Salmonella</i> Typhimurium DT104 in Different Hosts","year":2013,"lang":"en","type":"article","venue":"Science","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":348,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"National Human Genome Research Institute; National Institute of Allergy and Infectious Diseases; European Commission; National Institute of General Medical Sciences; European Molecular Biology Laboratory; Wellcome Trust; University of Glasgow; National Institutes of Health; National Science Foundation","keywords":"Biology; Multiple drug resistance; Salmonella; Antibiotic resistance; Phylogenetic tree; Genome; Transmission (telecommunications); Gene; Genotype; Antimicrobial; Microbiology; Bacteria; Genetics; Drug resistance","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007999934,0.0001672089,0.0003398943,0.00003388416,0.0001264621,0.00003582433,0.0006884959,0.00008059638,0.0001711047],"category_scores_gemma":[0.0008204253,0.00006139445,0.00007429872,0.0007909865,0.0005411186,0.0001826129,0.0002013935,0.0001366664,0.00006313147],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005287554,"about_ca_system_score_gemma":0.00002422491,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002504718,"about_ca_topic_score_gemma":0.0004146946,"domain_scores_codex":[0.9980848,0.000103661,0.0004549109,0.0004820076,0.0002773047,0.0005972841],"domain_scores_gemma":[0.9988235,0.0005511911,0.0001831777,0.0001342445,0.0001379298,0.0001700135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000008928328,0.00007137607,0.3307555,0.000005543563,0.000001237148,0.000001567847,0.00004481553,0.000009117151,0.6637586,0.0001857514,0.000222075,0.004935497],"study_design_scores_gemma":[0.00009758727,0.0001066824,0.9758617,0.00003216129,0.000002532767,0.000002686371,0.0001565264,0.0007781232,0.01956499,0.002313574,0.0009192636,0.0001641891],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959614,0.0001855073,0.000003004802,0.000900572,0.0002361739,0.0002304512,0.00001303647,0.00003236055,0.002437518],"genre_scores_gemma":[0.9992746,0.0000411177,0.0001410454,0.0002661847,0.0001004645,0.00002142279,0.000007346982,9.587551e-7,0.0001468937],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6451062,"threshold_uncertainty_score":0.3786402,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0132401131946104,"score_gpt":0.2193682682305408,"score_spread":0.2061281550359304,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}