{"id":"W2105348114","doi":"10.1139/z05-139","title":"Phylogeographic patterning of mtDNA in the widely distributed harvest mouse (<i>Micromys minutus</i>) suggests dramatic cycles of range contraction and expansion during the mid- to late Pleistocene","year":2005,"lang":"en","type":"article","venue":"Canadian Journal of Zoology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Biology; Phylogeography; Archipelago; Nucleotide diversity; Range (aeronautics); Cytochrome b; Ecology; Mitochondrial DNA; Lineage (genetic); mtDNA control region; Zoology; Population; Pleistocene; Haplotype; Evolutionary biology; Phylogenetics; Genetics; Gene; Paleontology; Genotype; Demography","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001663586,0.0001528716,0.0001516301,0.0009133948,0.0002429161,0.000196123,0.0001858807,0.0001490534,0.0006129862],"category_scores_gemma":[0.0002565785,0.0001282574,0.0001536763,0.0004284941,0.0002962061,0.0001682026,0.0003012728,0.000188459,0.0001160911],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001680949,"about_ca_system_score_gemma":0.00009071577,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002119048,"about_ca_topic_score_gemma":0.005828803,"domain_scores_codex":[0.9999194,0.0000128167,0.000006517103,0.00003714823,0.00001175952,0.00001226885],"domain_scores_gemma":[0.9997708,0.00002636597,0.0001379121,0.00001221363,0.0000167506,0.00003590559],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002256064,0.00005782587,0.7793673,0.00003557113,0.00008676486,0.0001767493,0.0008912348,0.0002353934,0.210161,0.000175675,0.00005400964,0.008532782],"study_design_scores_gemma":[0.000002903253,0.00004349645,0.9979699,0.000003531991,0.00001124172,0.0001389341,0.00009153816,0.0002533591,0.001322838,0.00002959972,0.000130095,0.000002599076],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997354,0.00003497983,0.00009017035,0.000003620816,2.310641e-7,0.000001335741,0.00003396702,0.000002001075,0.00009824024],"genre_scores_gemma":[0.9994015,0.00003298074,0.0003367178,0.000006980469,0.00000125927,0.000004256723,0.0001437386,0.000001932927,0.00007064804],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002119048,"threshold_uncertainty_score":0.004213452,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00719559267998994,"score_gpt":0.2025356215078656,"score_spread":0.1953400288278757,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}