{"id":"W2105480873","doi":"10.1128/aem.01155-15","title":"Clostridium botulinum Group II Isolate Phylogenomic Profiling Using Whole-Genome Sequence Data","year":2015,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Botulinum Toxin and Related Neurological Disorders","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada; Public Health Agency of Canada","funders":"","keywords":"Multilocus sequence typing; Biology; Genetics; In silico; Typing; Clade; Whole genome sequencing; Genome; SNP; Single-nucleotide polymorphism; Sequence analysis; Phylogenetic tree; Computational biology; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003209359,0.0003079186,0.000281471,0.0009647315,0.0002683014,0.0004107614,0.000120541,0.0002773505,0.0003271124],"category_scores_gemma":[0.0007593036,0.0001334948,0.0004293824,0.001222797,0.00007775149,0.0001393929,0.0002776371,0.0002482898,0.0001702827],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000208057,"about_ca_system_score_gemma":0.0002865132,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003822513,"about_ca_topic_score_gemma":0.006493075,"domain_scores_codex":[0.9997906,0.00004955849,0.00001563107,0.00006845055,0.00003747309,0.00003839087],"domain_scores_gemma":[0.9998088,0.0000615848,0.00004170168,0.00001957916,0.00004068139,0.00002764068],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009441648,0.0001979016,0.2651581,0.0002413299,0.0002593047,0.0004445534,0.0006013585,0.005090396,0.6922702,0.0001263332,0.0003567197,0.03430972],"study_design_scores_gemma":[0.00003078863,0.0005436491,0.922757,0.00005601064,0.0003105529,0.001201454,0.0008989526,0.02575323,0.04523283,0.0002652272,0.002913853,0.00003643521],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955062,0.0001274193,0.002739566,0.00001893987,0.000002756921,0.00002381811,0.001310954,0.00001836611,0.0002519859],"genre_scores_gemma":[0.9816533,0.0001889614,0.01075041,0.00003159844,0.000002941371,0.00002522277,0.007106224,0.00001380766,0.0002276549],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003822513,"threshold_uncertainty_score":0.007600486,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06094395498620161,"score_gpt":0.2523485947339746,"score_spread":0.191404639747773,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}