{"id":"W2105725017","doi":"10.1128/jcm.40.2.575-583.2002","title":"Development and Evaluation of Real-Time PCR-Based Fluorescence Assays for Detection of <i>Chlamydia</i> <i>pneumoniae</i>","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":95,"is_retracted":false,"has_abstract":true,"ca_institutions":"Columbia College","funders":"","keywords":"TaqMan; Chlamydophila pneumoniae; Chlamydiaceae; Biology; Chlamydia; Microbiology; Polymerase chain reaction; Nested polymerase chain reaction; Molecular biology; Virology; Real-time polymerase chain reaction; Taq polymerase; Serotype; 16S ribosomal RNA; Chlamydia trachomatis; Gene; Immunology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007091655,0.0001444726,0.0007494364,0.0002484501,0.00008343701,0.000004351242,0.0001996004,0.0004221995,0.0001724737],"category_scores_gemma":[0.003281504,0.0001178059,0.0002393612,0.0001673732,0.0005895135,0.0000861087,0.00004332979,0.0004622731,0.0000302478],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005965965,"about_ca_system_score_gemma":0.0002762637,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007592215,"about_ca_topic_score_gemma":0.000005255358,"domain_scores_codex":[0.9964326,0.001139193,0.001836317,0.0002783933,0.0000660506,0.0002474635],"domain_scores_gemma":[0.9946147,0.001973967,0.001404106,0.0002387866,0.001731507,0.00003696717],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004792762,0.0005717812,0.00431851,0.00003805713,0.0002375671,5.102671e-7,0.00006636274,0.00003549548,0.928248,0.00001318372,0.0004440933,0.06554721],"study_design_scores_gemma":[0.004065961,0.001659602,0.01432974,0.00007428294,0.0001833827,0.000236584,0.00002761938,0.0001316526,0.9698214,0.00008354161,0.009258967,0.0001272986],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970343,0.0009049835,0.0005523171,0.0001956087,0.0006775716,0.0004209802,0.00002251444,0.00000775021,0.0001840423],"genre_scores_gemma":[0.9966239,0.0002258512,0.002899342,0.00002369636,0.00007621403,0.00001341814,0.00001169453,0.0000130748,0.0001128217],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0654199,"threshold_uncertainty_score":0.4803985,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1001817568651324,"score_gpt":0.3793353456149309,"score_spread":0.2791535887497985,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}