{"id":"W2105786909","doi":"10.1038/ncomms6751","title":"A genome-wide association study of marginal zone lymphoma shows association to the HLA region","year":2015,"lang":"en","type":"article","venue":"Nature Communications","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency","funders":"National Center for Advancing Translational Sciences; National Center for Chronic Disease Prevention and Health Promotion; National Institute of Environmental Health Sciences; National Heart, Lung, and Blood Institute; Karolinska Institutet; Yale University; BC Cancer Agency; Cancer Council NSW; Medical Research Council; Institut National Du Cancer; University of Texas MD Anderson Cancer Center; Centers for Disease Control and Prevention; National Institutes of Health; Health Research Board; H. Lundbeck A/S; Dansk Kræftforsknings Fond; Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail; National Health and Medical Research Council; José Carreras Leukämie-Stiftung; University of Pittsburgh; Stockholms Läns Landsting; Canadian Institutes of Health Research; Bundesamt für Strahlenschutz; MedStar Health Research Institute; Cancerfonden; World Health Organization; University of Southern California; Division of Cancer Prevention, National Cancer Institute; University of Sydney; U.S. Department of Health and Human Services; University of California, San Francisco; Michael Smith Health Research BC; Fondation de France; Generalitat de Catalunya; Bundesministerium für Bildung und Forschung; National Institute on Aging; University at Buffalo; European Commission; Compagnia di San Paolo; U.S. Public Health Service; Associazione Italiana per la Ricerca sul Cancro; National Cancer Institute; Lundbeckfonden; State of Connecticut Department of Public Health; American Cancer Society; Ohio State University; Wake Forest University; National Human Genome Research Institute; Cancer Council Victoria; Brigham and Women's Hospital; Fondation ARC pour la Recherche sur le Cancer; Memorial Sloan-Kettering Cancer Center","keywords":"Genome-wide association study; Lymphoma; Human leukocyte antigen; Genetic association; Biology; Marginal zone; Marginal zone B-cell lymphoma; Genetics; Immunology; B cell; Genotype; Gene; Single-nucleotide polymorphism; Antigen","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006644818,0.0003235981,0.0003596459,0.0005270829,0.0004438002,0.0006381441,0.0002896219,0.0004608154,0.002959254],"category_scores_gemma":[0.003035182,0.0001470032,0.0005986965,0.0009808004,0.0003758991,0.0001936311,0.0005702749,0.0005386447,0.0002257116],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001646654,"about_ca_system_score_gemma":0.0002091661,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003401827,"about_ca_topic_score_gemma":0.00409257,"domain_scores_codex":[0.9994279,0.0001785685,0.00004125526,0.0002243971,0.00007673818,0.0000511443],"domain_scores_gemma":[0.9987264,0.0004993886,0.000356391,0.0001522013,0.0000996806,0.0001660194],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002420162,0.0001081372,0.942691,0.0001633303,0.00276264,0.001046372,0.000294475,0.0001968882,0.0298245,0.0003066992,0.00138508,0.01880091],"study_design_scores_gemma":[0.0001241021,0.0002394051,0.9928647,0.00001887335,0.0009504799,0.001357199,0.0001111525,0.0003178212,0.001654451,0.0002253565,0.002126863,0.000009556425],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951981,0.002219019,0.001015946,0.0002671833,0.00003118678,0.000008345931,0.0006103685,0.00004619554,0.0006037087],"genre_scores_gemma":[0.9986047,0.0003095765,0.0004274367,0.00008104758,0.00002464888,0.000004329842,0.0003019859,0.000009492366,0.0002368972],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003401827,"threshold_uncertainty_score":0.009899676,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03640856667268588,"score_gpt":0.3097156953413877,"score_spread":0.2733071286687018,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}