{"id":"W2105969549","doi":"10.1186/s12862-014-0241-9","title":"Integrative analysis of young genes, positively selected genes and lncRNAs in the development of Drosophila melanogaster","year":2014,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Developmental Biology and Gene Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Diabetes Canada; University of Toronto","funders":"National Natural Science Foundation of China","keywords":"Biology; Drosophila melanogaster; Gene; Phenotype; Genetics; Melanogaster; Drosophila (subgenus); Evolutionary biology; Computational biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003337917,0.0001216535,0.0002251953,0.0001623301,0.00005819062,0.000001669426,0.0001274869,0.0001737149,0.000006155723],"category_scores_gemma":[0.00004936544,0.00008467763,0.00005335892,0.0003558889,0.0002186356,0.000003475227,0.00007432932,0.00004458267,8.109282e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001386869,"about_ca_system_score_gemma":0.00009482879,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002057993,"about_ca_topic_score_gemma":0.0007179853,"domain_scores_codex":[0.998903,0.00032931,0.0003267187,0.0002527114,0.0000531669,0.0001350977],"domain_scores_gemma":[0.9995369,0.00005790327,0.0001415032,0.0001273659,0.0001179049,0.00001840216],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009678446,0.00003780737,0.5527608,0.000006159116,0.0002118686,8.049322e-8,0.0002413264,0.00003165533,0.4446222,0.0004235376,0.00001498026,0.001552822],"study_design_scores_gemma":[0.0002463319,0.0001537713,0.9372708,0.000005677408,0.00006177168,0.000009247535,0.0001483725,0.0002517821,0.06100656,0.0001365446,0.0006153775,0.00009380624],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9925286,0.0015685,0.005417944,0.00003661698,0.00003944384,0.0001232759,0.00002391922,0.000002651347,0.0002591063],"genre_scores_gemma":[0.9922513,0.00006505572,0.006537712,0.00003275074,0.00002553446,0.00001931153,0.001007074,0.000003892785,0.00005738655],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.38451,"threshold_uncertainty_score":0.3453054,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00875161188072347,"score_gpt":0.243322479839049,"score_spread":0.2345708679583255,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}