{"id":"W2106118201","doi":"10.1186/1742-4690-4-71","title":"Detection, characterization and regulation of antisense transcripts in HIV-1","year":2007,"lang":"en","type":"article","venue":"Retrovirology","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":118,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec; Université du Québec à Montréal","funders":"Canadian Institutes of Health Research","keywords":"Jurkat cells; Transfection; HEK 293 cells; Molecular biology; Biology; Antisense RNA; Luciferase; Retrovirus; Transcription (linguistics); Cell culture; Virology; Provirus; Gene; Messenger RNA; Virus; T cell; Genetics; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002500835,0.0000939156,0.0002270669,0.0002097926,0.0000640265,0.000001625049,0.00003904603,0.000251648,0.00003919914],"category_scores_gemma":[0.00003347023,0.00008552608,0.00002948653,0.0001395176,0.0002387751,0.00004976,0.00001867698,0.0001404458,0.00002057399],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001495967,"about_ca_system_score_gemma":0.000008610221,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005531139,"about_ca_topic_score_gemma":0.0001903444,"domain_scores_codex":[0.9992128,0.00008411743,0.0002877274,0.0001819612,0.00001848634,0.0002149313],"domain_scores_gemma":[0.9996986,0.00006092791,0.0001025602,0.000095746,0.00003216524,0.00001000634],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002556536,0.00003620703,0.08240147,0.00001553529,0.00002262104,0.000002305783,0.0003357731,7.000816e-7,0.9041401,0.0003260531,0.00000928456,0.01245431],"study_design_scores_gemma":[0.0007343396,0.0001675912,0.6808206,0.000006009707,0.0000128317,0.00003771393,0.00004680849,0.000004168949,0.3138263,0.00003687146,0.004245381,0.00006138086],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940826,0.0007209443,0.004304065,0.0001103005,0.0003726843,0.0001112621,0.00001070973,0.00002389466,0.0002635729],"genre_scores_gemma":[0.9987525,0.0001854834,0.00002318666,0.00005140831,0.00002181239,0.000002199799,0.000042525,0.000007542201,0.0009133457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5984191,"threshold_uncertainty_score":0.3487653,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00701624349220519,"score_gpt":0.2037734511514554,"score_spread":0.1967572076592502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}