{"id":"W2106431826","doi":"10.1172/jci64560","title":"HERV-K–specific T cells eliminate diverse HIV-1/2 and SIV primary isolates","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":95,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Maple Leaf Medical Clinic; Simon Fraser University; St. Michael's Hospital","funders":"National Institute of Allergy and Infectious Diseases; Ontario HIV Treatment Network; Ontario Innovation Trust; National Institutes of Health; Pfizer","keywords":"Biology; Virology; Cytotoxic T cell; CD8; Simian immunodeficiency virus; Immune system; T cell; Long terminal repeat; Antigen; Virus; Genome; In vitro; Immunology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008996822,0.00008256747,0.0002155093,0.00001120926,0.0001025762,0.0000392707,0.0001043505,0.0001077355,0.0001714536],"category_scores_gemma":[0.0001572976,0.00003235976,0.0001158441,0.000122663,0.0001162303,0.0003052294,0.00004641565,0.0001947396,0.00003980649],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000109543,"about_ca_system_score_gemma":0.00001328861,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004232466,"about_ca_topic_score_gemma":0.000005236802,"domain_scores_codex":[0.9987821,0.0001513837,0.0006616252,0.00009725329,0.0001602042,0.0001474489],"domain_scores_gemma":[0.9985187,0.0005780553,0.0004607181,0.00003124887,0.0001228403,0.0002884258],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008651165,0.0003561753,0.4840712,0.00001598209,0.00005226884,0.000004754504,0.0004759148,0.00001698303,0.4051132,0.0009241512,0.006174554,0.1027083],"study_design_scores_gemma":[0.0002778515,0.0003088828,0.9682334,0.00003203695,0.00003685915,0.00002144791,0.0001772386,0.00005191197,0.003278391,0.002766584,0.02471225,0.0001031526],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953601,0.0004742437,0.000009249464,0.003235589,0.0005387557,0.00005929593,0.000008822478,0.000008287486,0.0003055977],"genre_scores_gemma":[0.9957507,0.0005284761,0.001412343,0.0005940772,0.001579478,6.978757e-7,0.0000102439,7.759284e-7,0.0001232283],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4841622,"threshold_uncertainty_score":0.1877297,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07784058759385254,"score_gpt":0.2911674121585729,"score_spread":0.2133268245647204,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}