{"id":"W2106564977","doi":"10.1128/iai.01383-07","title":"Aggregation via the Red, Dry, and Rough Morphotype Is Not a Virulence Adaptation in <i>Salmonella enterica</i> Serovar Typhimurium","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; BC Children's Hospital; University of British Columbia; University of Victoria; University of Calgary","funders":"","keywords":"Salmonella enterica; Biology; Salmonella; Virulence; Microbiology; Serotype; Fimbria; Host adaptation; Enterobacteriaceae; Host (biology); Pilus; Immune system; Biofilm; Bacteria; Escherichia coli; Gene; Immunology; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001259264,0.0002531598,0.0001952626,0.0002458631,0.0001481577,0.0003143127,0.000160534,0.000202728,0.0005478794],"category_scores_gemma":[0.0001817254,0.0001968242,0.0002562565,0.000117241,0.000258631,0.0001479905,0.0003275665,0.0004495232,0.0001751624],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002155742,"about_ca_system_score_gemma":0.0001378957,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008694759,"about_ca_topic_score_gemma":0.00150714,"domain_scores_codex":[0.9997858,0.00003275862,0.00002264239,0.00004308069,0.00004751774,0.00006815742],"domain_scores_gemma":[0.9997059,0.00002979608,0.000121083,0.0000403171,0.00002646896,0.00007645319],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006169251,0.0000124839,0.001167002,0.000007037048,0.000002282592,0.00004126491,0.0000112164,0.00001246237,0.9984173,0.00002211517,0.00001316016,0.0002320214],"study_design_scores_gemma":[0.00003198539,0.001348816,0.2898743,0.00001368516,0.00003625502,0.001782532,0.0003685655,0.00166787,0.703229,0.0001113237,0.001512736,0.00002287932],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992008,0.00006619035,0.0002471421,0.00002142109,0.000003223414,0.000002996134,0.00005423572,0.000009653771,0.000394345],"genre_scores_gemma":[0.9987832,0.00005131077,0.0005006103,0.0000320212,0.000003227839,0.00000581276,0.0001987613,0.000007011012,0.000418054],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008694759,"threshold_uncertainty_score":0.001832843,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04003908498037804,"score_gpt":0.229933761825063,"score_spread":0.1898946768446849,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}