{"id":"W2106564977","doi":"10.1128/iai.01383-07","title":"Aggregation via the Red, Dry, and Rough Morphotype Is Not a Virulence Adaptation in <i>Salmonella enterica</i> Serovar Typhimurium","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; BC Children's Hospital; University of British Columbia; University of Victoria; University of Calgary","funders":"","keywords":"Salmonella enterica; Biology; Salmonella; Virulence; Microbiology; Serotype; Fimbria; Host adaptation; Enterobacteriaceae; Host (biology); Pilus; Immune system; Biofilm; Bacteria; Escherichia coli; Gene; Immunology; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002885437,0.0001029365,0.0001284969,0.00001430586,0.0003105164,0.00002042704,0.00006322176,0.00009207365,0.00005784353],"category_scores_gemma":[0.0000578542,0.00004324973,0.00003146507,0.0002335679,0.0001214463,0.0001518659,0.00005125022,0.0001744437,0.00001278365],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001665085,"about_ca_system_score_gemma":0.000003986358,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008303449,"about_ca_topic_score_gemma":0.0008190438,"domain_scores_codex":[0.9991677,0.0002602829,0.0001880083,0.0001750156,0.00006924191,0.0001397524],"domain_scores_gemma":[0.9995854,0.0001822276,0.00009072765,0.00006198772,0.00004271223,0.00003696088],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001885543,0.0001142602,0.7763409,0.000008504352,0.00001437499,0.000003890363,0.001390293,0.00002040343,0.1215177,0.00004651476,0.0002564153,0.1000982],"study_design_scores_gemma":[0.0001537023,0.0001633742,0.9914116,0.00001060244,0.000005323965,0.00006432046,0.00009545615,0.001307317,0.002135805,0.0004036658,0.00415157,0.00009731992],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981571,0.000195615,0.0000572665,0.001025004,0.0001148448,0.0001293741,0.000004401846,0.00003092143,0.0002854405],"genre_scores_gemma":[0.9966714,0.002208541,0.00002446869,0.0009314601,0.00005634066,0.00001226264,0.00001666891,8.544643e-7,0.00007795681],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2150706,"threshold_uncertainty_score":0.9983004,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04003908498037804,"score_gpt":0.229933761825063,"score_spread":0.1898946768446849,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}