{"id":"W2106578715","doi":"10.1038/srep04245","title":"Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array","year":2014,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Government of Canada; Genome Canada; Ontario Genomics; Natural Sciences and Engineering Research Council of Canada; McMaster University; Ontario Genomics Institute","keywords":"Ancient DNA; Metagenomics; Vibrio cholerae; Biology; DNA sequencing; Yersinia pestis; DNA microarray; Computational biology; Shotgun sequencing; Evolutionary biology; DNA; Genetics; Gene; Bacteria; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002142821,0.0001755821,0.0001497953,0.0006973798,0.0002923548,0.0004250325,0.0001393968,0.0003638546,0.0008634552],"category_scores_gemma":[0.0003689906,0.0001815835,0.0001157435,0.0004866799,0.0002449408,0.0001586367,0.0003501045,0.000230755,0.0004468769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001551943,"about_ca_system_score_gemma":0.0001590077,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007486477,"about_ca_topic_score_gemma":0.002220737,"domain_scores_codex":[0.9997415,0.00004033376,0.00001539083,0.0001026629,0.00006472556,0.00003535766],"domain_scores_gemma":[0.9998815,0.00003518506,0.00002999049,0.00001140187,0.00002463281,0.00001721557],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001154376,0.00002369246,0.02858743,0.00004750479,0.0000170855,0.00008669374,0.0001889244,0.0001417492,0.9594285,0.0001145083,0.0001447248,0.01110372],"study_design_scores_gemma":[0.00001477803,0.0004838263,0.2965517,0.00003732149,0.0001028406,0.001439803,0.0006612677,0.005266101,0.683268,0.0003183531,0.0118204,0.00003554343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9849052,0.0006682304,0.01117812,0.0001328219,0.00001638824,0.00002067349,0.00118112,0.0001616885,0.001735638],"genre_scores_gemma":[0.9631184,0.0004896662,0.03156186,0.0002283697,0.00001930035,0.0000621127,0.001464129,0.00001792228,0.003038234],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008634552,"threshold_uncertainty_score":0.00288856,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01109118267578093,"score_gpt":0.23910107498359,"score_spread":0.2280098923078091,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}