{"id":"W2106665579","doi":"10.1073/pnas.0901260106","title":"On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales","year":2009,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":218,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; Dalhousie University","funders":"Lawrence Berkeley National Laboratory; Lawrence Livermore National Laboratory; Los Alamos National Laboratory; Biological and Environmental Research; National Aeronautics and Space Administration; Office of Science; Norges Forskningsråd; Canadian Institutes of Health Research; University of Connecticut; U.S. Department of Energy","keywords":"Biology; Genome; Phylogenetic tree; Genetics; Horizontal gene transfer; Thermophile; Gene; Firmicutes; Phylogenetics; Thermotoga maritima; Evolutionary biology; Archaea; Bacteria; Escherichia coli; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001798496,0.0002345778,0.0001536517,0.0004833408,0.0003277221,0.0005564947,0.0001877185,0.0002079418,0.0008612157],"category_scores_gemma":[0.0002649856,0.00007615134,0.00008611743,0.0004745852,0.0004118895,0.0004697333,0.0004115237,0.0004300804,0.0002919412],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001712386,"about_ca_system_score_gemma":0.0002135857,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005870747,"about_ca_topic_score_gemma":0.0009397008,"domain_scores_codex":[0.9999311,0.00001029193,0.000003219651,0.00002961608,0.00001176275,0.00001394617],"domain_scores_gemma":[0.9998542,0.00004243479,0.00003304346,0.00002138849,0.00002337927,0.00002557914],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006074572,0.00003382697,0.03252886,0.0002279334,0.00003820486,0.0008212758,0.0009066314,0.0008846876,0.9087948,0.006405946,0.0001429872,0.04860741],"study_design_scores_gemma":[0.00002756465,0.0006615704,0.6063544,0.000461047,0.0002255632,0.004603539,0.005819061,0.006241211,0.2730166,0.0180119,0.08449616,0.00008135766],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9889833,0.004004945,0.003401222,0.0002124499,0.00001532808,0.000006645379,0.0001753917,0.00003104415,0.00316966],"genre_scores_gemma":[0.9906273,0.003358154,0.003444298,0.0001264325,0.00001866477,0.000007683309,0.0004994791,0.00001712096,0.001900913],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008612157,"threshold_uncertainty_score":0.00288111,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02137951927549708,"score_gpt":0.2765950600771165,"score_spread":0.2552155408016194,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}