{"id":"W2106697715","doi":"10.1128/jvi.00858-09","title":"Human Endogenous Retroviral Long Terminal Repeat Sequences as Cell Type-Specific Promoters in Retroviral Vectors","year":2009,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Terry Fox Research Institute","funders":"","keywords":"Long terminal repeat; Biology; Promoter; Endogenous retrovirus; Retrovirus; Gene; Reporter gene; Murine leukemia virus; Genetics; Transfection; Expression vector; Transcription (linguistics); Virology; Molecular biology; Genome; Gene expression; Recombinant DNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002773044,0.0001327307,0.000266035,0.00004962192,0.0001283208,0.00003724913,0.00029724,0.000139836,0.0003562294],"category_scores_gemma":[0.00003151378,0.00005741917,0.000118942,0.0002637926,0.00007324,0.0001179616,0.00002551386,0.0003095699,0.00002254473],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006401643,"about_ca_system_score_gemma":0.00002554446,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007181599,"about_ca_topic_score_gemma":0.0001674248,"domain_scores_codex":[0.9986973,0.0001447508,0.0004689308,0.0001941446,0.0002006514,0.0002942442],"domain_scores_gemma":[0.9994321,0.00004723657,0.0003000892,0.00005696676,0.00006661995,0.0000969645],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000918401,0.0001818842,0.02195987,0.000001736426,0.000006312601,0.0005608044,0.0001968327,0.0000251293,0.9690249,0.00007856403,0.0000932543,0.007778876],"study_design_scores_gemma":[0.0006131697,0.01359837,0.9586849,0.00002595541,0.00002691403,0.001944411,0.000178365,0.00001011365,0.01832119,0.003654554,0.002696101,0.0002459064],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964758,0.0003617776,7.805357e-7,0.001368853,0.0002486759,0.0000869105,0.000003224932,0.00001008277,0.001443862],"genre_scores_gemma":[0.9988674,0.00006775147,0.00009429607,0.0002650784,0.0005216594,6.933302e-7,0.000006203213,9.626967e-7,0.0001759898],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9507037,"threshold_uncertainty_score":0.3900462,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02500093612021374,"score_gpt":0.2383883079161092,"score_spread":0.2133873717958954,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}