{"id":"W2106763642","doi":"10.1093/bioinformatics/17.4.385","title":"PhyloBLAST: facilitating phylogenetic analysis of BLAST results","year":2001,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Phylogenetic tree; Perl; Multiple sequence alignment; The Internet; Sequence (biology); Computer science; Sequence analysis; Sequence alignment; Biology; World Wide Web; Genetics; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007566538,0.002687162,0.001891252,0.006959563,0.001809448,0.003413254,0.003517345,0.001462359,0.0696416],"category_scores_gemma":[0.01893198,0.001965265,0.0009909463,0.005498815,0.0007546433,0.003359837,0.003808375,0.003180345,0.06064588],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008669379,"about_ca_system_score_gemma":0.001531677,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001542139,"about_ca_topic_score_gemma":0.002027266,"domain_scores_codex":[0.997743,0.0008528935,0.0002975292,0.0003434924,0.0005686331,0.0001943652],"domain_scores_gemma":[0.9942853,0.003450889,0.0004068399,0.0007015743,0.0007093739,0.0004460116],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003322298,0.0002061668,0.003812986,0.003405651,0.0002050001,0.00165607,0.001467985,0.002096811,0.03698397,0.01120086,0.7592227,0.1764195],"study_design_scores_gemma":[0.001774778,0.0003115115,0.00939426,0.001752129,0.0002810832,0.00283784,0.0009466772,0.08032119,0.05750058,0.03483398,0.8096012,0.0004446862],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.01025281,0.0009434235,0.349153,0.001025488,0.000695965,0.000717802,0.07132591,0.5513527,0.01453293],"genre_scores_gemma":[0.04078239,0.0009388913,0.7603335,0.000430333,0.0002604101,0.001922062,0.1309403,0.05872376,0.00566835],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.0696416,"threshold_uncertainty_score":0.2329744,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01466242036027388,"score_gpt":0.2422725233755163,"score_spread":0.2276101030152425,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}