{"id":"W2107055282","doi":"10.1128/jb.01117-10","title":"Genome Annotation and Intraviral Interactome for the <i>Streptococcus pneumoniae</i> Virulent Phage Dp-1","year":2010,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre hospitalier universitaire de Québec; Université Laval","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Biology; Interactome; Siphoviridae; Virulence; Genome; Genetics; Streptococcus pneumoniae; Phage display; Hypothetical protein; Open reading frame; Computational biology; Bacteriophage; Microbiology; Gene; Peptide sequence; Bacteria; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001533053,0.0005701467,0.0008350135,0.001707519,0.0005981202,0.0006434955,0.0002707387,0.0004495965,0.001486235],"category_scores_gemma":[0.0004625689,0.0002161262,0.0007463614,0.001261782,0.0001174528,0.0002738015,0.0003602191,0.0005340198,0.0006221668],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003826045,"about_ca_system_score_gemma":0.0006411622,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001966185,"about_ca_topic_score_gemma":0.00315202,"domain_scores_codex":[0.9998316,0.00001951028,0.00001177754,0.00005915371,0.00005107525,0.00002683565],"domain_scores_gemma":[0.9997054,0.00007895824,0.00008318436,0.00002312657,0.00003480027,0.00007449128],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001447618,0.0001385549,0.01339475,0.0006249496,0.0001252608,0.0007575421,0.000252691,0.0005877289,0.9595607,0.0002311285,0.0007672161,0.02211196],"study_design_scores_gemma":[0.0001736442,0.000950528,0.676158,0.0002641455,0.001275325,0.005935808,0.0007449993,0.01833273,0.2467391,0.0009854194,0.04830478,0.0001355043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9669455,0.002436865,0.007184439,0.0001767155,0.00002321948,0.00006071717,0.02163416,0.0003479209,0.001190464],"genre_scores_gemma":[0.7995577,0.002368901,0.03527076,0.0001314903,0.00004870688,0.000137675,0.1589939,0.0002668893,0.003223949],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001966185,"threshold_uncertainty_score":0.004971981,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007350457349741865,"score_gpt":0.2483409287119457,"score_spread":0.2409904713622038,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}