{"id":"W2107070824","doi":"10.1128/mbio.00398-13","title":"Evolutionary Dynamics of Vibrio cholerae O1 following a Single-Source Introduction to Haiti","year":2013,"lang":"en","type":"article","venue":"mBio","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":138,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; Public Health Agency of Canada","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; National Institutes of Health; National Science Foundation","keywords":"Vibrio cholerae; Cholera; Horizontal gene transfer; Biology; El Tor; Phylogenetic tree; Genome; Genetics; Population; Evolutionary biology; Gene; Virology; Bacteria; Demography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003273932,0.0003016013,0.0002322692,0.0004546517,0.0006739936,0.0006738771,0.0003937206,0.0005380546,0.001003301],"category_scores_gemma":[0.001056363,0.0001388295,0.0002109826,0.0004959274,0.0003586216,0.0003484813,0.0006264611,0.0005865157,0.0001820593],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009418847,"about_ca_system_score_gemma":0.0004781669,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01415932,"about_ca_topic_score_gemma":0.02065744,"domain_scores_codex":[0.99981,0.00002176623,0.000006831267,0.0000718106,0.00002858666,0.00006095225],"domain_scores_gemma":[0.9996057,0.00007428168,0.00012571,0.00002026689,0.0001042191,0.00006977832],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009279686,0.0002393539,0.8491406,0.0001808634,0.0001689067,0.000631449,0.003080282,0.001216821,0.1256913,0.0003794302,0.0003895444,0.01795348],"study_design_scores_gemma":[0.0000035434,0.0001444326,0.9951611,0.00001569651,0.00003146266,0.0002372087,0.001091923,0.0009037147,0.001799266,0.00004264846,0.0005598862,0.000009039979],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994736,0.00006678615,0.00008419067,0.0000311455,0.000001832185,0.000005117233,0.0001030971,0.000002744671,0.0002314682],"genre_scores_gemma":[0.9988708,0.0001102105,0.0002564169,0.00005009462,0.000003916865,0.000009503502,0.0004921851,0.000004275373,0.0002025901],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01415932,"threshold_uncertainty_score":0.02815384,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007350890642837364,"score_gpt":0.2311629563066378,"score_spread":0.2238120656638004,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}