{"id":"W2107094749","doi":"10.1128/iai.73.10.6249-6259.2005","title":"SseJ Deacylase Activity by <i>Salmonella enterica</i> Serovar Typhimurium Promotes Virulence in Mice","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":113,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"National Institute of Dental and Craniofacial Research; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; Ministero dello Sviluppo Economico; University of Toronto; Hospital for Sick Children; Ontario Innovation Trust; University of Washington","keywords":"Salmonella enterica; Biology; Virulence; Effector; Type three secretion system; Vacuole; Microbiology; Mutant; Salmonella; Secretion; Pathogenicity island; Bacterial outer membrane; Wild type; Cell biology; Cytoplasm; Biochemistry; Bacteria; Escherichia coli; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003653395,0.000142787,0.0001869289,0.00001583315,0.0001620244,0.00003256623,0.0001003333,0.0001247667,0.0001368516],"category_scores_gemma":[0.00007981096,0.00006838877,0.00004829684,0.0002287265,0.00007775794,0.0002292136,0.0000772478,0.0002583215,0.00004655315],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003719565,"about_ca_system_score_gemma":0.000004665188,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00463713,"about_ca_topic_score_gemma":0.00143417,"domain_scores_codex":[0.9989442,0.0003247551,0.0001858655,0.0002360541,0.00006340983,0.0002457225],"domain_scores_gemma":[0.9995376,0.0002092337,0.00008476459,0.00005958276,0.00002990399,0.00007885099],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005164662,0.0002808207,0.1386993,0.000005462776,0.000005777927,8.046644e-7,0.00006167044,0.00000172956,0.7786996,0.000008389834,0.0005155078,0.08166923],"study_design_scores_gemma":[0.0002238617,0.0002086666,0.9091224,0.00001530031,0.000006319466,0.00002537218,0.00003576653,0.0002199605,0.05555021,0.0001126976,0.03427241,0.0002070552],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99765,0.0002376696,0.00001309005,0.001035484,0.00009300612,0.0001315895,0.00001113996,0.00006746064,0.0007606202],"genre_scores_gemma":[0.9985729,0.0006267824,0.00002011259,0.0005246857,0.00008913886,0.00001397435,0.00002144224,0.000001066284,0.000129871],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7704231,"threshold_uncertainty_score":0.7009984,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01497934947463856,"score_gpt":0.2340069004852881,"score_spread":0.2190275510106496,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}