{"id":"W2107097628","doi":"10.1101/gr.126573.111","title":"Genomic analysis identifies association of <i>Fusobacterium</i> with colorectal carcinoma","year":2011,"lang":"en","type":"article","venue":"Genome Research","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1969,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Center for Advancing Translational Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Human Genome Research Institute; University of Guelph; Natural Sciences and Engineering Research Council of Canada; Broad Institute; Albert J. Ryan Foundation; Damon Runyon Cancer Research Foundation","keywords":"Fusobacteria; Biology; Colorectal cancer; Fusobacterium; Carcinoma; Carcinogenesis; Firmicutes; Cancer; Genetics; Gene; Bacteroides; 16S ribosomal RNA; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001015012,0.0001445292,0.0001971241,0.0009785999,0.0002284723,0.000232959,0.0001081398,0.0002656651,0.001757779],"category_scores_gemma":[0.0007185619,0.0001224653,0.0001673131,0.0006489516,0.0001942217,0.00008934295,0.0002432171,0.0001961464,0.0002119682],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001761328,"about_ca_system_score_gemma":0.0001150532,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003138621,"about_ca_topic_score_gemma":0.002268055,"domain_scores_codex":[0.9998322,0.00002434527,0.00001474197,0.00004286892,0.00003919497,0.00004656653],"domain_scores_gemma":[0.9995363,0.0000851353,0.0001827677,0.00003332329,0.00006148573,0.0001010535],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001296532,0.00006693719,0.5087532,0.00006962683,0.00009667908,0.001451403,0.0001597569,0.0001811043,0.4794105,0.00009774783,0.0002514036,0.008165054],"study_design_scores_gemma":[0.000006193942,0.0001590357,0.9812455,0.000005904311,0.00004072876,0.002103901,0.0001858184,0.0003664154,0.01509858,0.00004610923,0.0007363261,0.000005361381],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987938,0.0001649813,0.0003340131,0.00003806179,0.000003466185,0.000005810622,0.000242287,0.00001166924,0.0004058715],"genre_scores_gemma":[0.9993613,0.00006596636,0.0002280538,0.00001862845,0.000002814373,0.000002841135,0.0001918002,0.000003345604,0.0001252519],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003138621,"threshold_uncertainty_score":0.006240726,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03300477784526228,"score_gpt":0.2963286537008464,"score_spread":0.2633238758555841,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}