{"id":"W2107249189","doi":"10.1093/bioinformatics/btq430","title":"Cytoscape Web: an interactive web-based network browser","year":2010,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":746,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Institutes of Health; National Institute of General Medical Sciences; Ontario Genomics Institute; Ontario Genomics; Genome Canada; University of Michigan; University of Toronto; Memorial Sloan-Kettering Cancer Center","keywords":"Computer science; JavaScript; World Wide Web; Web application; Web page; ActionScript; Visualization; Information retrieval; Data mining","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003629441,0.0002853581,0.0002145223,0.00006042564,0.0001727416,0.0001287267,0.0004429382,0.0003717247,0.0001262621],"category_scores_gemma":[0.00004464739,0.0002572039,0.0001367136,0.0001385918,0.0001229104,0.00003364824,0.0001529398,0.000384053,0.000144393],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000128922,"about_ca_system_score_gemma":0.0002543734,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000038755,"about_ca_topic_score_gemma":0.0001704633,"domain_scores_codex":[0.9985684,0.00002590949,0.0005284565,0.0001922621,0.0001815276,0.0005035169],"domain_scores_gemma":[0.9985961,0.00002340388,0.000257682,0.0007519709,0.0001297776,0.0002410377],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001280937,0.0008699831,0.009627581,0.0004659648,0.0006489448,0.00001496911,0.001535246,0.01433536,0.3527481,0.005701444,0.4858561,0.1269154],"study_design_scores_gemma":[0.001850193,0.0005408791,0.0007257535,0.00003174908,0.00004424899,0.00004253062,0.0002394368,0.4543544,0.008225552,0.000268676,0.5329311,0.0007455387],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9201182,0.0001420682,0.02537923,0.0003923422,0.003366328,0.0008676971,0.0001629606,0.0002033298,0.04936789],"genre_scores_gemma":[0.951735,0.00003630085,0.04342945,0.002485919,0.001203167,0.00002761552,0.0006026601,0.00004586436,0.000433995],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.440019,"threshold_uncertainty_score":0.999988,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00650414083413331,"score_gpt":0.2293681171664229,"score_spread":0.2228639763322896,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}