{"id":"W2107359483","doi":"10.1128/iai.00039-09","title":"<i>Salmonella enterica</i> Serovar Enteritidis Pathogenicity Island 1 Is Not Essential for but Facilitates Rapid Systemic Spread in Chickens","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation","keywords":"Biology; Salmonella enterica; Salmonella enteritidis; Microbiology; Pathogenicity island; Salmonella; Serotype; Colonization; Enterobacteriaceae; Mutant; Pathogen; Type three secretion system; Virology; Bacteria; Escherichia coli; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004150827,0.0001817213,0.0003170678,0.00002445286,0.0002131424,0.00004680289,0.0001039616,0.0001541072,0.0001092858],"category_scores_gemma":[0.00008166077,0.00009007501,0.0001371172,0.0001513026,0.00006484387,0.0001194854,0.00004267864,0.0001694996,0.00001169991],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002547343,"about_ca_system_score_gemma":0.000004695119,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002364856,"about_ca_topic_score_gemma":0.0004613721,"domain_scores_codex":[0.9987066,0.0002838381,0.0003497908,0.0002937423,0.00007021216,0.0002958004],"domain_scores_gemma":[0.9994552,0.0002286925,0.0001049104,0.0000822049,0.00005472372,0.00007423563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001688347,0.0001804064,0.1176444,0.00002368902,0.0000161111,0.000001765489,0.0002808338,9.237963e-7,0.8498086,0.00001822585,0.0003688969,0.03148732],"study_design_scores_gemma":[0.0005647215,0.000683959,0.9760569,0.00004596407,0.00001743667,0.00009510107,0.0002407805,0.0001472774,0.01700237,0.0003783191,0.004522411,0.0002447283],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998019,0.0003320343,0.00007100018,0.000559109,0.0002070177,0.0003175893,0.0002316437,0.00005855215,0.0002040632],"genre_scores_gemma":[0.9975137,0.001265233,0.00001614264,0.0008688582,0.0001139514,0.00002441911,0.0001087473,0.00000108499,0.00008790124],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8584125,"threshold_uncertainty_score":0.3673152,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02182933224611975,"score_gpt":0.2440468704998979,"score_spread":0.2222175382537782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}