{"id":"W2107359483","doi":"10.1128/iai.00039-09","title":"<i>Salmonella enterica</i> Serovar Enteritidis Pathogenicity Island 1 Is Not Essential for but Facilitates Rapid Systemic Spread in Chickens","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation","keywords":"Biology; Salmonella enterica; Salmonella enteritidis; Microbiology; Pathogenicity island; Salmonella; Serotype; Colonization; Enterobacteriaceae; Mutant; Pathogen; Type three secretion system; Virology; Bacteria; Escherichia coli; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001136783,0.0003837855,0.0002092287,0.0002055342,0.0001074899,0.0003361422,0.0002261017,0.000273496,0.0007756844],"category_scores_gemma":[0.0001772109,0.000197678,0.0002301356,0.00008534666,0.000276366,0.0001650636,0.0002791391,0.0005711387,0.0004135102],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003403541,"about_ca_system_score_gemma":0.0002412514,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001650488,"about_ca_topic_score_gemma":0.001835723,"domain_scores_codex":[0.9998326,0.00002064011,0.00001405875,0.00004403155,0.00004404676,0.00004450782],"domain_scores_gemma":[0.9997013,0.00003768156,0.0001286546,0.00003181748,0.0000236911,0.00007669025],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009394329,0.00001844083,0.0007799304,0.00002185582,0.000002746742,0.00005709786,0.00001252821,0.00003009953,0.9984834,0.00003188317,0.00003215512,0.0004359563],"study_design_scores_gemma":[0.00003839401,0.001192297,0.1145943,0.00005556175,0.00004670989,0.001395352,0.0002257787,0.001512236,0.8766161,0.0000817004,0.00422316,0.00001841933],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977835,0.0005052625,0.0005399019,0.00007798703,0.00001271614,0.00000828775,0.0002020083,0.00003297292,0.0008375234],"genre_scores_gemma":[0.9969325,0.0002223423,0.0007630275,0.00005262003,0.000005202775,0.00001403082,0.0004224249,0.00002033359,0.00156748],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001650488,"threshold_uncertainty_score":0.003281832,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02182933224611975,"score_gpt":0.2440468704998979,"score_spread":0.2222175382537782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}