{"id":"W2107546215","doi":"10.1093/nar/gkt400","title":"SGAtools: one-stop analysis and visualization of array-based genetic interaction screens","year":2013,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":194,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Human Genome Research Institute; Canadian Institutes of Health Research","keywords":"Biology; Genetic analysis; Computational biology; Visualization; Genome; Genetic screen; Genetics; Mutant; Gene; Artificial intelligence; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001794443,0.001704259,0.001704419,0.003681876,0.0007425563,0.00213179,0.001748835,0.0008136356,0.03292084],"category_scores_gemma":[0.002429126,0.0008557192,0.001558526,0.001624685,0.0004423424,0.0009751042,0.001619431,0.002195073,0.01021587],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005769056,"about_ca_system_score_gemma":0.0009329022,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001069779,"about_ca_topic_score_gemma":0.002054755,"domain_scores_codex":[0.9989604,0.0001914877,0.00009999571,0.0001781535,0.0004549019,0.0001150915],"domain_scores_gemma":[0.9980417,0.0009823514,0.0001982745,0.0002855914,0.0003103296,0.0001816213],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003299143,0.0004988948,0.009357397,0.003810248,0.000982822,0.002035216,0.0013844,0.00460749,0.4282834,0.01232245,0.3013491,0.2320695],"study_design_scores_gemma":[0.0008045529,0.000312357,0.0267662,0.000486703,0.0002946319,0.00173723,0.0004933953,0.1184523,0.5289658,0.01530964,0.3058336,0.0005436061],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.03482534,0.0008633937,0.5779223,0.0008841256,0.0004683137,0.0007409569,0.0696777,0.3066115,0.008006353],"genre_scores_gemma":[0.09793561,0.001490839,0.7687169,0.0009346312,0.0001729958,0.005123811,0.06185218,0.05009668,0.01367638],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.03292084,"threshold_uncertainty_score":0.1101311,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03178198603480616,"score_gpt":0.3299208541634189,"score_spread":0.2981388681286128,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}