{"id":"W2107751484","doi":"10.1186/gm62","title":"Copy number variations and cancer","year":2009,"lang":"en","type":"article","venue":"Genome Medicine","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":403,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Copy-number variation; Biology; Genetics; Structural variation; Human genome; Genome; Single-nucleotide polymorphism; Genome instability; Genome-wide association study; Germline; Computational biology; Genomics; SNP; Human genetics; Cancer; SNP array; Gene; DNA; Genotype; DNA damage","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007505079,0.0000795194,0.00009187824,0.00001735671,0.00007844942,0.000006476229,0.00006028444,0.00004909667,0.0004669903],"category_scores_gemma":[0.00001541499,0.00006588125,0.00001535277,0.00004937303,0.00004556933,0.000002041721,0.00002057492,0.00003513386,0.00001197905],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009111981,"about_ca_system_score_gemma":0.00003070012,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006403786,"about_ca_topic_score_gemma":0.00001193318,"domain_scores_codex":[0.9995307,0.0000140913,0.0001195792,0.0001508801,0.00005874589,0.0001260343],"domain_scores_gemma":[0.9997193,0.000003842378,0.00003492234,0.0001367651,0.00004411591,0.00006108146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001026418,0.0001381218,0.09411254,0.00004417471,0.0002108945,0.00001005198,0.002511462,0.0001402667,0.8382761,0.02744814,0.01426411,0.02274144],"study_design_scores_gemma":[0.002062832,0.0006970199,0.3807233,0.00002979198,0.0001167865,0.0001157436,0.0004138638,0.00004262182,0.009895293,0.003016389,0.6024475,0.0004388693],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9670286,0.00346862,0.003384243,0.006970221,0.0002186369,0.0001611206,0.00003868566,0.00001944392,0.01871044],"genre_scores_gemma":[0.9938902,0.0008573741,0.0003858207,0.001297083,0.0006062486,0.00001006047,0.00008516151,0.00000570155,0.002862337],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8283809,"threshold_uncertainty_score":0.5113216,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008173411182433884,"score_gpt":0.257472171987332,"score_spread":0.2492987608048981,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}