{"id":"W2107757889","doi":"10.1186/1471-2164-15-s6-s8","title":"Gene families as soft cliques with backbones: Amborellacontrasted with other flowering plants","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Chaining; Biology; Cluster analysis; Gene Annotation; Genome; Annotation; Gene; Computational biology; Genetics; Computer science; Artificial intelligence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005513198,0.00022469,0.0002354037,0.001376969,0.001017296,0.00106073,0.0006831504,0.0004380019,0.003841996],"category_scores_gemma":[0.002384143,0.0002148388,0.0005478112,0.001753599,0.0008438222,0.001163253,0.0007372107,0.0005177924,0.0005438614],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006923628,"about_ca_system_score_gemma":0.0004886952,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002949299,"about_ca_topic_score_gemma":0.005861169,"domain_scores_codex":[0.9996567,0.00005544592,0.00001525422,0.0001525829,0.00008017908,0.00003982948],"domain_scores_gemma":[0.9982168,0.0006852465,0.0004571278,0.000334278,0.0001456661,0.0001608178],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001382584,0.0003316834,0.2066443,0.0009138847,0.0003641435,0.00161174,0.003467632,0.07100745,0.3120538,0.1890275,0.01001688,0.2031785],"study_design_scores_gemma":[0.000138789,0.000209678,0.1774483,0.0002029299,0.0002632715,0.004730213,0.001871806,0.4073276,0.0850425,0.2660108,0.05659875,0.0001553697],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.725863,0.0004951274,0.2631662,0.0004953595,0.00002293301,0.0001015915,0.001492073,0.001649041,0.006714744],"genre_scores_gemma":[0.8522454,0.0001190553,0.1435593,0.0001162768,0.00001747691,0.00006944211,0.002063624,0.0003317657,0.001477666],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003841996,"threshold_uncertainty_score":0.01285273,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008034647044978072,"score_gpt":0.2096216282096798,"score_spread":0.2015869811647017,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}