{"id":"W2108038274","doi":"10.1128/jcm.01548-08","title":"Multilocus Sequence Typing Analysis of<i>Clostridium perfringens</i>Isolates from Necrotic Enteritis Outbreaks in Broiler Chicken Populations","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":142,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Nutreco (Canada); University of Guelph","funders":"University of Guelph; Poultry Industry Council; Canadian Food Inspection Agency; Canadian Poultry Research Council","keywords":"Multilocus sequence typing; Biology; Clostridium perfringens; Outbreak; Microbiology; Typing; Virology; Population; Locus (genetics); Genetics; Genotype; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009187833,0.0002434899,0.001927496,0.000849792,0.00007617863,0.00001118269,0.0003274184,0.0004182355,0.000463384],"category_scores_gemma":[0.001988284,0.0002047451,0.00102762,0.0009863063,0.0004479098,0.00009350325,0.000134318,0.001203178,0.00002023104],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001299951,"about_ca_system_score_gemma":0.0004632002,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007017832,"about_ca_topic_score_gemma":0.0002329966,"domain_scores_codex":[0.9956869,0.0003914842,0.002921838,0.0003963423,0.0001518454,0.0004515213],"domain_scores_gemma":[0.9968287,0.0009791343,0.0009391817,0.0004136264,0.0005595298,0.0002797834],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001234325,0.000828923,0.4799793,0.00002628883,0.00139375,0.0003074299,0.0002466303,0.0002332661,0.5120289,0.000005747658,0.0004270364,0.003288462],"study_design_scores_gemma":[0.01074331,0.00285119,0.8936083,0.0007545528,0.003427447,0.002072881,0.000346859,0.002136389,0.0758768,0.00006896444,0.007488087,0.0006252349],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965132,0.001286579,0.0001069649,0.001004471,0.0006024515,0.0002089106,0.0001538517,0.00001199157,0.000111621],"genre_scores_gemma":[0.9957659,0.001670614,0.001699068,0.000214417,0.0004107482,0.000002594102,0.0001104327,0.00002402086,0.0001022333],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.436152,"threshold_uncertainty_score":0.8349261,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1538128930722438,"score_gpt":0.411813022964185,"score_spread":0.2580001298919412,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}