{"id":"W2108051940","doi":"10.1371/journal.pone.0016076","title":"Cryptococcus gattii Virulence Composite: Candidate Genes Revealed by Microarray Analysis of High and Less Virulent Vancouver Island Outbreak Strains","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National and Kapodistrian University of Athens; University of Sydney","keywords":"Virulence; Cryptococcus gattii; Biology; Cryptococcus neoformans; Cryptococcosis; Gene; Gene expression profiling; Microarray analysis techniques; Microbiology; Gene expression; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001244174,0.0004571403,0.0004442184,0.0006739293,0.0003384321,0.0006216058,0.0001432361,0.0003252541,0.0005002324],"category_scores_gemma":[0.0001677893,0.0001784844,0.0002913323,0.0007815039,0.0002221059,0.0001113805,0.0002564689,0.0004832455,0.0002063221],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004993172,"about_ca_system_score_gemma":0.0006179844,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01831855,"about_ca_topic_score_gemma":0.02740673,"domain_scores_codex":[0.999675,0.00001604728,0.00002033061,0.00008344706,0.0001120124,0.00009313605],"domain_scores_gemma":[0.9998317,0.00002903178,0.00004008759,0.000009682389,0.00004743163,0.00004213663],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001413388,0.00002168535,0.002737016,0.00004269261,0.000004706996,0.00003389169,0.00004628854,0.00002633247,0.9962322,0.000007686029,0.00002714616,0.0006789379],"study_design_scores_gemma":[0.00002451292,0.0006507189,0.6752492,0.00003223214,0.00009861746,0.0008153013,0.00099818,0.001520914,0.3176134,0.00005723435,0.002898794,0.00004085769],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9965031,0.0002674114,0.0004545826,0.00005246416,0.000006246428,0.00002467932,0.002053835,0.00002339161,0.0006142618],"genre_scores_gemma":[0.9849674,0.0007133616,0.003492167,0.0001545392,0.00001595551,0.00008403542,0.007600317,0.0000240469,0.002948073],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9816815,"threshold_uncertainty_score":0.03642386,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03703871204351841,"score_gpt":0.23858163214112,"score_spread":0.2015429200976016,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}