{"id":"W2108125433","doi":"10.1371/journal.pone.0049803","title":"Yersinia pestis: New Evidence for an Old Infection","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Social Sciences and Humanities Research Council of Canada","keywords":"Yersinia pestis; Genome; Biology; Evolutionary biology; Plague (disease); Phylogenetic tree; Ancient DNA; Phylogenetics; Genomics; Genetics; Genealogy; Geography; History; Gene; Demography; Virulence; Archaeology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001056115,0.0004719713,0.0005887468,0.001262475,0.0007875241,0.001921243,0.000405677,0.001122443,0.002835142],"category_scores_gemma":[0.001609006,0.000256321,0.0002724729,0.001271538,0.001952073,0.002816707,0.001017029,0.00157366,0.0006892486],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00053358,"about_ca_system_score_gemma":0.0004275675,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001102174,"about_ca_topic_score_gemma":0.001387249,"domain_scores_codex":[0.9995916,0.00006017541,0.00003749648,0.0001546775,0.00007736673,0.00007865542],"domain_scores_gemma":[0.9988513,0.0003485086,0.0002621282,0.0001958425,0.0001765039,0.0001658479],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003982803,0.000243285,0.4228483,0.003156348,0.0005696107,0.00802867,0.006400883,0.0007335356,0.2205521,0.0261398,0.007774546,0.2995701],"study_design_scores_gemma":[0.00006793436,0.0004254777,0.7763642,0.001085012,0.0002318737,0.009835679,0.005397269,0.0007994692,0.01288086,0.01552755,0.1772424,0.0001423199],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8492172,0.1164289,0.006827514,0.01060621,0.0007606611,0.00002275641,0.001720294,0.0001398702,0.01427654],"genre_scores_gemma":[0.9492135,0.03911103,0.00452805,0.001790126,0.0008150266,0.00001147915,0.001803109,0.00003216662,0.002695479],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002835142,"threshold_uncertainty_score":0.009484529,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1834654772306488,"score_gpt":0.3600452256113286,"score_spread":0.1765797483806798,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}