{"id":"W2108141290","doi":"10.1093/nar/gkl734","title":"Non-canonical CRP sites control competence regulons in Escherichia coli and many other γ-proteobacteria","year":2006,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institutes of Health","keywords":"Biology; Regulon; Escherichia coli; Proteobacteria; Competence (human resources); Genetics; Enterobacteriaceae; Microbiology; Bacteria; Gene; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001566897,0.000393991,0.0002033104,0.0005495684,0.0001835802,0.0003256407,0.0001870092,0.0002076262,0.0008922818],"category_scores_gemma":[0.0004913154,0.0001961684,0.0002064872,0.0003962462,0.0003032034,0.0001960888,0.0003909505,0.0003124451,0.0004951014],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002500113,"about_ca_system_score_gemma":0.0002075895,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00172577,"about_ca_topic_score_gemma":0.002220902,"domain_scores_codex":[0.9997402,0.00002700528,0.00001748664,0.00007359398,0.00008328728,0.00005833],"domain_scores_gemma":[0.9996217,0.00009088612,0.00009192229,0.00004091202,0.00009202061,0.00006253217],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006865674,0.00001214207,0.002220938,0.0000579713,0.000003707753,0.00005778385,0.000049152,0.00005106678,0.9940975,0.00009982641,0.00005462029,0.003226724],"study_design_scores_gemma":[0.00004309685,0.0003237326,0.2692352,0.00006867627,0.0000362871,0.001055347,0.0005263617,0.001787176,0.7192286,0.0008501656,0.006800842,0.00004447969],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891137,0.002846478,0.005015582,0.0000745097,0.00002290721,0.00003984939,0.0006747413,0.0001421932,0.002070055],"genre_scores_gemma":[0.9934645,0.0009403523,0.002848379,0.00007486744,0.00001360667,0.00002848205,0.0009292746,0.00002936759,0.001671088],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00172577,"threshold_uncertainty_score":0.003431499,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0162438365956264,"score_gpt":0.2838767672733712,"score_spread":0.2676329306777448,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}