{"id":"W2108141290","doi":"10.1093/nar/gkl734","title":"Non-canonical CRP sites control competence regulons in Escherichia coli and many other γ-proteobacteria","year":2006,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institutes of Health","keywords":"Biology; Regulon; Escherichia coli; Proteobacteria; Competence (human resources); Genetics; Enterobacteriaceae; Microbiology; Bacteria; Gene; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005707924,0.0001736558,0.0002326679,0.0001169973,0.0001220337,0.00008281544,0.0003570051,0.0004736608,0.00009760255],"category_scores_gemma":[0.00006791732,0.0001599288,0.0000465303,0.000246043,0.0006066865,0.000004644014,0.000312421,0.0003671592,0.00003318463],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002756709,"about_ca_system_score_gemma":0.0001123092,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003468037,"about_ca_topic_score_gemma":0.0005145037,"domain_scores_codex":[0.9982383,0.0001527062,0.0002658109,0.0005306802,0.0002099263,0.0006026125],"domain_scores_gemma":[0.9992607,0.00002622789,0.00004586907,0.0004520886,0.0001211243,0.00009396363],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001945178,0.00009402583,0.02165633,0.00001502799,0.00001408013,0.000009085265,0.000009971697,0.000002290106,0.9761059,0.0005064381,0.000836572,0.0005557339],"study_design_scores_gemma":[0.002315489,0.0009758706,0.3720827,0.00003415168,0.000007367685,0.00001795177,0.00006242931,0.0005240971,0.5538697,0.0006084588,0.06911193,0.0003898309],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962338,0.0002964127,0.0001341111,0.001065357,0.00005439126,0.0004430048,0.00003406111,0.00001446032,0.00172438],"genre_scores_gemma":[0.9974554,0.0001202089,0.001231204,0.0001554747,0.0002514235,0.00005782251,0.00002634396,0.00003388986,0.0006682482],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4222362,"threshold_uncertainty_score":0.6521708,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0162438365956264,"score_gpt":0.2838767672733712,"score_spread":0.2676329306777448,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}