{"id":"W2108195147","doi":"10.1128/jb.00746-09","title":"Evidence that Human<i>Chlamydia pneumoniae</i>Was Zoonotically Acquired","year":2009,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Chlamydiaceae; Chlamydia; Chlamydophila pneumoniae; Human pathogen; Pseudogene; Phascolarctos cinereus; Pathogen; Genetics; Virology; Phylogenetic tree; Microbiology; Genome; Gene; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001234321,0.0002055943,0.0005890418,0.0003495505,0.0002119604,0.00003551431,0.000528639,0.0003619718,0.00126993],"category_scores_gemma":[0.001303394,0.0001625207,0.0002373077,0.0001873318,0.0004430969,0.0004569245,0.00007275285,0.0007687217,0.0004820013],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001241486,"about_ca_system_score_gemma":0.0001895118,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001162934,"about_ca_topic_score_gemma":0.000003793574,"domain_scores_codex":[0.9977321,0.000708548,0.0006800403,0.0003040823,0.00008114318,0.0004940843],"domain_scores_gemma":[0.9978746,0.0005142048,0.0006332439,0.0004360079,0.0004783951,0.00006354417],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003089882,0.0002328906,0.01849231,0.000006543438,0.0001554948,0.00006287363,0.0001259713,0.000008533309,0.9691215,0.000571942,0.001586943,0.009326078],"study_design_scores_gemma":[0.0009592651,0.003066644,0.8767587,0.0001326104,0.00007055613,0.005122321,0.00006414956,5.530526e-7,0.09535646,0.001730225,0.01650793,0.0002305651],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904141,0.002434157,0.0003657633,0.004265848,0.001171209,0.0001567814,0.000002639384,0.00003106148,0.00115845],"genre_scores_gemma":[0.9977857,0.0004648786,0.0001746272,0.0003090495,0.0002532597,0.000003114432,0.000004746005,0.00001337827,0.000991268],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.873765,"threshold_uncertainty_score":0.999643,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05787571421515215,"score_gpt":0.3278575758310328,"score_spread":0.2699818616158807,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}