{"id":"W2108195147","doi":"10.1128/jb.00746-09","title":"Evidence that Human<i>Chlamydia pneumoniae</i>Was Zoonotically Acquired","year":2009,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Chlamydiaceae; Chlamydia; Chlamydophila pneumoniae; Human pathogen; Pseudogene; Phascolarctos cinereus; Pathogen; Genetics; Virology; Phylogenetic tree; Microbiology; Genome; Gene; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003765609,0.0001399224,0.0001195801,0.0004420581,0.0004239664,0.0006068656,0.0001668083,0.0004542139,0.003343666],"category_scores_gemma":[0.0008723555,0.0001088406,0.0001165707,0.0004199166,0.0005849804,0.0001895053,0.0002460193,0.0003921644,0.0003529027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000300594,"about_ca_system_score_gemma":0.0003567777,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01146125,"about_ca_topic_score_gemma":0.006942467,"domain_scores_codex":[0.9997092,0.00006037057,0.00001785237,0.00008986134,0.0000590724,0.00006354427],"domain_scores_gemma":[0.9991946,0.0001422047,0.0002786249,0.00008683436,0.0002109219,0.00008680812],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005132135,0.00006263562,0.9104232,0.0005376582,0.0001284953,0.0009776813,0.001487602,0.00006808629,0.05650057,0.00202885,0.002009244,0.02526275],"study_design_scores_gemma":[0.000009760583,0.0002177802,0.9684836,0.0001225091,0.0000930727,0.003747789,0.001294855,0.0001190163,0.007856036,0.0003524157,0.01768824,0.00001499166],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.982127,0.003309422,0.001021123,0.001127546,0.00009318298,0.00001647449,0.001206992,0.00002345439,0.01107477],"genre_scores_gemma":[0.9970606,0.0008800991,0.0003236516,0.000317494,0.00003562928,0.000003501892,0.0003985206,0.000002657885,0.0009777881],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01146125,"threshold_uncertainty_score":0.02278912,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05787571421515215,"score_gpt":0.3278575758310328,"score_spread":0.2699818616158807,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}