{"id":"W2108232020","doi":"10.3852/mycologia.98.6.1088","title":"New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes","year":2006,"lang":"en","type":"article","venue":"Mycologia","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":261,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Museum of Nature","funders":"National Science Foundation","keywords":"Biology; Monophyly; Phylogenetic tree; Taxon; Evolutionary biology; Supermatrix; Phylogenetics; Dothideomycetes; Botany; Genetics; Gene; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006223649,0.0002786413,0.0002006842,0.001111011,0.0004075292,0.0010785,0.0002112618,0.0003317989,0.001305496],"category_scores_gemma":[0.002259733,0.0001280656,0.0001840776,0.0007521098,0.0004853401,0.001022773,0.0005861343,0.0007366949,0.0004528487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003472645,"about_ca_system_score_gemma":0.0003332839,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001135493,"about_ca_topic_score_gemma":0.003294717,"domain_scores_codex":[0.9997479,0.00009616397,0.00002426497,0.0000608354,0.00004539792,0.00002531036],"domain_scores_gemma":[0.9991953,0.0003710683,0.0001938387,0.00007463882,0.00006671262,0.0000985318],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004875076,0.0002021041,0.4547757,0.0004512858,0.0001922256,0.0009190291,0.003753316,0.005351131,0.2755139,0.00453182,0.0004308029,0.2533912],"study_design_scores_gemma":[0.00004197303,0.0002551092,0.9337612,0.0001792065,0.0001214644,0.001878909,0.00215648,0.03272036,0.007744677,0.01107157,0.01001762,0.00005149435],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9808389,0.001358556,0.01565202,0.0002696374,0.000007453495,0.00001492259,0.0002098567,0.00004071937,0.001607985],"genre_scores_gemma":[0.9822578,0.0007077683,0.01613107,0.00006354767,0.00001377833,0.000009992451,0.0004636061,0.00001196992,0.0003403819],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001305496,"threshold_uncertainty_score":0.004367292,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02575446970581066,"score_gpt":0.2345271422298937,"score_spread":0.2087726725240831,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}