{"id":"W2108285918","doi":"10.1099/mic.0.050542-0","title":"The LysR-type PcaQ protein regulates expression of a protocatechuate-inducible ABC-type transport system in Sinorhizobium meliloti","year":2011,"lang":"en","type":"article","venue":"Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; McMaster University","keywords":"Sinorhizobium meliloti; Operon; Permease; Mutant; Biology; Gene; ATP-binding cassette transporter; DNA; Gene cluster; Wild type; Biochemistry; Genetics; Transporter","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005210844,0.0002065536,0.0003242905,0.00002786704,0.0001618367,0.00000965437,0.0005438028,0.000283248,0.0001109048],"category_scores_gemma":[0.00003473868,0.00007144102,0.0000886479,0.000508037,0.0001879279,0.00006625894,0.00007568917,0.0001826294,0.00006876876],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004735262,"about_ca_system_score_gemma":0.00002780484,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009623643,"about_ca_topic_score_gemma":0.0005817935,"domain_scores_codex":[0.998355,0.0002326718,0.0004879691,0.0004153085,0.0000669802,0.0004420332],"domain_scores_gemma":[0.9993354,0.00007296197,0.0002171781,0.0001810527,0.0001440667,0.0000493423],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002782761,0.00009784207,0.006231416,0.00003189565,0.00001259186,0.000005865221,0.0001875904,8.932162e-8,0.992548,0.000153402,0.00008610904,0.0003669026],"study_design_scores_gemma":[0.0001782841,0.0005323885,0.01102583,0.000133905,0.000009989472,0.0000206075,0.000247759,6.604775e-7,0.9863732,0.0001181026,0.001194989,0.00016431],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972528,0.0002520413,1.465892e-7,0.0001183791,0.0001717707,0.001640013,0.00001637079,0.00008444217,0.0004640485],"genre_scores_gemma":[0.9992676,0.000004909199,0.0002121535,0.00002152479,0.00004428782,0.000140751,0.00004465965,0.000003210257,0.0002608476],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006174849,"threshold_uncertainty_score":0.291328,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02369283177529439,"score_gpt":0.1996772197206982,"score_spread":0.1759843879454038,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}