{"id":"W2108389135","doi":"10.1128/jvi.79.18.11752-11765.2005","title":"Evidence that Insertion of <i>Tomato Ringspot Nepovirus</i> NTB-VPg Protein in Endoplasmic Reticulum Membranes Is Directed by Two Domains: a C-Terminal Transmembrane Helix and an N-Terminal Amphipathic Helix","year":2005,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Endoplasmic reticulum; Transmembrane domain; Membrane; Glycosylation; Transmembrane protein; Biochemistry; Membrane protein; Green fluorescent protein; N-terminus; C-terminus; Fusion protein; Cell biology; Biophysics; Peptide sequence; Amino acid; Recombinant DNA; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001129256,0.0002574954,0.0006464708,0.000118953,0.0001378253,0.00004612674,0.0004029004,0.0001749332,0.00009537807],"category_scores_gemma":[0.000240679,0.0001199155,0.0001195024,0.0003120735,0.0003492872,0.0006764864,0.00007598707,0.0004835569,0.000005095891],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000044048,"about_ca_system_score_gemma":0.00003648746,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002760386,"about_ca_topic_score_gemma":0.002319996,"domain_scores_codex":[0.9972879,0.00059537,0.0007458845,0.0003381748,0.0005424797,0.0004901926],"domain_scores_gemma":[0.9985434,0.000448568,0.0005982168,0.00007888826,0.0001342759,0.0001966982],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00137908,0.000255267,0.003999963,0.0000810637,0.00003037527,0.0002518626,0.000466518,0.000008452866,0.9830342,0.000003827362,0.0001221354,0.01036725],"study_design_scores_gemma":[0.002290973,0.003896574,0.07717801,0.001011912,0.00007921763,0.003218238,0.000328964,0.001085241,0.9070981,0.0002856513,0.003066254,0.0004608936],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.991915,0.003827693,0.000003463511,0.00377282,0.00004249504,0.0003138246,0.00008618279,0.00002227449,0.00001618683],"genre_scores_gemma":[0.9953191,0.003802619,0.0001758766,0.0004525137,0.0001803287,0.00001969265,0.000006051313,0.000002976593,0.00004080581],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07593614,"threshold_uncertainty_score":0.4890012,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03310904452275147,"score_gpt":0.286249414901409,"score_spread":0.2531403703786576,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}