{"id":"W2108418216","doi":"10.1093/jhered/esr104","title":"Short Reads, Circular Genome: Skimming SOLiD Sequence to Construct the Bighorn Sheep Mitochondrial Genome","year":2011,"lang":"en","type":"article","venue":"Journal of Heredity","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta; Alberta Innovates; Life Technologies Corporation","keywords":"Biology; Genome; Mitochondrial DNA; Ovis canadensis; Evolutionary biology; Sequence (biology); Whole genome sequencing; Clade; DNA sequencing; Genetics; Reference genome; Computational biology; Genomics; Phylogenetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003576579,0.0003061292,0.0002715564,0.0006243718,0.000270036,0.0004033191,0.0003089628,0.0003610716,0.002854937],"category_scores_gemma":[0.001062898,0.0003312609,0.0005050645,0.0004794019,0.0002219698,0.000365986,0.0005195675,0.0005759806,0.001677237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000184928,"about_ca_system_score_gemma":0.0003038774,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007084204,"about_ca_topic_score_gemma":0.002292685,"domain_scores_codex":[0.9998683,0.00002498972,0.0000115787,0.00003923434,0.00003883483,0.00001704645],"domain_scores_gemma":[0.9996118,0.0001507879,0.00007466039,0.00005602555,0.00005815899,0.00004858995],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003274025,0.0000313909,0.0009263695,0.0002420147,0.00002568987,0.0001563226,0.0001464708,0.0007333254,0.9782254,0.000826848,0.0002673825,0.01809147],"study_design_scores_gemma":[0.0001191025,0.001091182,0.02509556,0.00009191932,0.0001317818,0.001029084,0.0002570366,0.02033259,0.9190654,0.003037498,0.0296839,0.00006486109],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6103293,0.001165418,0.3774328,0.0002161592,0.0001557619,0.0005860409,0.004615599,0.00184882,0.003650178],"genre_scores_gemma":[0.4253567,0.0007770739,0.5505939,0.0002089046,0.00004280004,0.0004498388,0.01539041,0.0005734042,0.006607018],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002854937,"threshold_uncertainty_score":0.00955075,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03632564478483532,"score_gpt":0.2635131011952679,"score_spread":0.2271874564104326,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}