{"id":"W2108418216","doi":"10.1093/jhered/esr104","title":"Short Reads, Circular Genome: Skimming SOLiD Sequence to Construct the Bighorn Sheep Mitochondrial Genome","year":2011,"lang":"en","type":"article","venue":"Journal of Heredity","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta; Alberta Innovates; Life Technologies Corporation","keywords":"Biology; Genome; Mitochondrial DNA; Ovis canadensis; Evolutionary biology; Sequence (biology); Whole genome sequencing; Clade; DNA sequencing; Genetics; Reference genome; Computational biology; Genomics; Phylogenetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000358495,0.0001830346,0.0002702421,0.00004830442,0.0001666776,0.00002847212,0.0004886045,0.0001131866,0.00003084075],"category_scores_gemma":[0.00009478149,0.0001317134,0.0001997522,0.00008594517,0.0001507187,0.000002538518,0.0001825247,0.0001909767,0.000007877448],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003217868,"about_ca_system_score_gemma":0.0001338806,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002183209,"about_ca_topic_score_gemma":0.00001933075,"domain_scores_codex":[0.9987304,0.00007411372,0.0004573091,0.0002338141,0.0002112351,0.0002930906],"domain_scores_gemma":[0.9989909,0.00001456078,0.0001939669,0.0003653616,0.0002773769,0.0001578326],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001058429,0.00003821915,0.002769664,0.000007813826,0.0002321951,0.00003576807,0.0003853283,0.00008170697,0.9945306,0.00001723698,0.0004837062,0.001311896],"study_design_scores_gemma":[0.001917036,0.002924295,0.3273906,0.00006084703,0.0005119878,0.003034926,0.002097156,0.00002344919,0.4218363,0.001662903,0.2371927,0.001347843],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943638,0.001742295,0.00147195,0.0001335897,0.001362174,0.0001719626,0.00003732515,0.000001996299,0.0007148712],"genre_scores_gemma":[0.9939705,0.0003901446,0.003220058,0.0002275204,0.002115754,0.000005254245,0.000004520868,0.00001995036,0.00004626694],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5726944,"threshold_uncertainty_score":0.5371119,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03632564478483532,"score_gpt":0.2635131011952679,"score_spread":0.2271874564104326,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}